miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 23905 0.68 0.301402
Target:  5'- --uCGUGaGCGCGC-CCGCGagcgugaCCGUCGc -3'
miRNA:   3'- uauGCAC-CGCGCGuGGCGC-------GGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 4851 0.68 0.287758
Target:  5'- --cCGUacGCGCGCGCCGUGCCGa--- -3'
miRNA:   3'- uauGCAc-CGCGCGUGGCGCGGCagcu -5'
24292 3' -60.8 NC_005263.2 + 44996 0.71 0.172489
Target:  5'- --uCGaGGCGCGCAUgGCGCCGUgGc -3'
miRNA:   3'- uauGCaCCGCGCGUGgCGCGGCAgCu -5'
24292 3' -60.8 NC_005263.2 + 13655 0.74 0.115053
Target:  5'- -gACGgucGUGCGCACCGCGUCG-CGAa -3'
miRNA:   3'- uaUGCac-CGCGCGUGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 9623 0.67 0.340466
Target:  5'- cUGCGUGaGCGCcucGCGguaaaucuggcUUGCGCUGUCGAg -3'
miRNA:   3'- uAUGCAC-CGCG---CGU-----------GGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 24202 0.67 0.317055
Target:  5'- -aGCGaUGcGCGCGaccugguuCAgCGCGCCGUUGAa -3'
miRNA:   3'- uaUGC-AC-CGCGC--------GUgGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 44663 0.69 0.235628
Target:  5'- gAUGCGUcGCGCGCGCCGaagaaGUCGgCGGc -3'
miRNA:   3'- -UAUGCAcCGCGCGUGGCg----CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 20649 0.75 0.092248
Target:  5'- -cGCaGUGGC-CGCGCCGCucgucgcgGCCGUCGAa -3'
miRNA:   3'- uaUG-CACCGcGCGUGGCG--------CGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 12109 0.67 0.316296
Target:  5'- cAUGCGcagcGGCGCGCGCgccauuacgCGCGCUccaggcgGUCGAg -3'
miRNA:   3'- -UAUGCa---CCGCGCGUG---------GCGCGG-------CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 10016 0.76 0.08252
Target:  5'- gGUGCG-GGCGCaGCACCGCcGCCGagcugcUCGAg -3'
miRNA:   3'- -UAUGCaCCGCG-CGUGGCG-CGGC------AGCU- -5'
24292 3' -60.8 NC_005263.2 + 11611 0.68 0.287758
Target:  5'- ---aGUGGCGCaGCACUuCGCCuUCGAc -3'
miRNA:   3'- uaugCACCGCG-CGUGGcGCGGcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 16855 0.68 0.302133
Target:  5'- cUGCccGGCGcCGCGCCGCGCgGaacCGAa -3'
miRNA:   3'- uAUGcaCCGC-GCGUGGCGCGgCa--GCU- -5'
24292 3' -60.8 NC_005263.2 + 25569 0.71 0.196732
Target:  5'- -gACGUcGGCGUccGCGCCGC-CCGUCa- -3'
miRNA:   3'- uaUGCA-CCGCG--CGUGGCGcGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 37440 0.71 0.177114
Target:  5'- cAUACGUcGGCGCGCGCggucugCGCGgCGUCc- -3'
miRNA:   3'- -UAUGCA-CCGCGCGUG------GCGCgGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 30714 0.73 0.139224
Target:  5'- -cGCcaGGCGCGCgGCCGCGCCGgcaGAc -3'
miRNA:   3'- uaUGcaCCGCGCG-UGGCGCGGCag-CU- -5'
24292 3' -60.8 NC_005263.2 + 29065 0.74 0.118249
Target:  5'- -cGCGUccucggggcGGCGCGCAUCG-GCCGUCGc -3'
miRNA:   3'- uaUGCA---------CCGCGCGUGGCgCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 46817 0.67 0.356756
Target:  5'- -aACGUGaGCGCGaucuuUCGCGCCGcucCGAc -3'
miRNA:   3'- uaUGCAC-CGCGCgu---GGCGCGGCa--GCU- -5'
24292 3' -60.8 NC_005263.2 + 5788 0.67 0.348543
Target:  5'- -cGCGcacGCGC-CGCUGCGCCGUCu- -3'
miRNA:   3'- uaUGCac-CGCGcGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 9974 0.67 0.339666
Target:  5'- cUGCG-GGUGCGCacGCCGUccgguucGCCGUCu- -3'
miRNA:   3'- uAUGCaCCGCGCG--UGGCG-------CGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 40874 0.67 0.317055
Target:  5'- -aACGUcgaagaGGCGCGCGCCuucugguCGCCGgCGAu -3'
miRNA:   3'- uaUGCA------CCGCGCGUGGc------GCGGCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.