miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 8189 0.68 0.302133
Target:  5'- cUGCGUuuucgguugcGGCaCGUACgGCGCCGUCa- -3'
miRNA:   3'- uAUGCA----------CCGcGCGUGgCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 25944 0.77 0.07153
Target:  5'- -gGCGcUGGCGCaaugcgaGCGUCGCGCCGUCGAg -3'
miRNA:   3'- uaUGC-ACCGCG-------CGUGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 45656 0.69 0.235628
Target:  5'- --uCGUucGGCGCGCaaguguuuGCCGCGCCGUa-- -3'
miRNA:   3'- uauGCA--CCGCGCG--------UGGCGCGGCAgcu -5'
24292 3' -60.8 NC_005263.2 + 6247 0.69 0.235628
Target:  5'- -cGCGgccaGGCGCGguC-GUGCCGUCGGg -3'
miRNA:   3'- uaUGCa---CCGCGCguGgCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 38629 0.68 0.309526
Target:  5'- -aGCGccGGCGCGaaugaaGCCGCGUCGcgcaUCGAc -3'
miRNA:   3'- uaUGCa-CCGCGCg-----UGGCGCGGC----AGCU- -5'
24292 3' -60.8 NC_005263.2 + 34819 0.67 0.324722
Target:  5'- -aAC-UGGCuGCGCA-CGCGCCaGUCGGu -3'
miRNA:   3'- uaUGcACCG-CGCGUgGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 3332 0.67 0.323949
Target:  5'- -aACGUcuGCGCGCcgccggcGCCGCGCgCgGUCGAg -3'
miRNA:   3'- uaUGCAc-CGCGCG-------UGGCGCG-G-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 9573 0.67 0.317055
Target:  5'- -aACGUGuccagGCGCugCGUGCCGUCc- -3'
miRNA:   3'- uaUGCACcg---CGCGugGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 35165 0.68 0.309526
Target:  5'- cUACGUGcGCGCGUACCaGCGCaaugCGc -3'
miRNA:   3'- uAUGCAC-CGCGCGUGG-CGCGgca-GCu -5'
24292 3' -60.8 NC_005263.2 + 3244 0.68 0.30878
Target:  5'- -cAgGUaGGCGCGauCGCCGCGCagacaggCGUCGAg -3'
miRNA:   3'- uaUgCA-CCGCGC--GUGGCGCG-------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 45467 0.7 0.2297
Target:  5'- gAUACGccGGCaaGCGCgaugaACCGCGCgGUCGGc -3'
miRNA:   3'- -UAUGCa-CCG--CGCG-----UGGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 16356 0.7 0.223898
Target:  5'- -gACGaaGCGCGCgGCCGCGUCGcUCGGc -3'
miRNA:   3'- uaUGCacCGCGCG-UGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 27129 0.74 0.108901
Target:  5'- -cGCGcaGGCGCGCAgCCGCGUCGgCGAu -3'
miRNA:   3'- uaUGCa-CCGCGCGU-GGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 38381 0.73 0.128341
Target:  5'- cUGCuGUGGCgaacgagcgcaaGCGCGCCGCaGCgGUCGAg -3'
miRNA:   3'- uAUG-CACCG------------CGCGUGGCG-CGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 36216 0.73 0.128341
Target:  5'- -cGCGcaGGCGCccgGCGCCGCGUCGUCa- -3'
miRNA:   3'- uaUGCa-CCGCG---CGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 31255 0.73 0.139224
Target:  5'- -cGCGcGGCGCgGCGCCGgGCagGUCGAa -3'
miRNA:   3'- uaUGCaCCGCG-CGUGGCgCGg-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20984 0.73 0.143036
Target:  5'- gGUACGgguucGGUGCaauuCGCCGCGCCcGUCGAa -3'
miRNA:   3'- -UAUGCa----CCGCGc---GUGGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 36149 0.72 0.146943
Target:  5'- aGUACG-GGCGCGCGCUcgagGCGaaCGUCGAu -3'
miRNA:   3'- -UAUGCaCCGCGCGUGG----CGCg-GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 21183 0.71 0.175715
Target:  5'- cGUGCGUGGCGagcuguucCGCAuCCGCGUugcacaaauccuguCGUCGAc -3'
miRNA:   3'- -UAUGCACCGC--------GCGU-GGCGCG--------------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 16487 0.7 0.212667
Target:  5'- -----cGGCGCuGCGCCGCgcgGCCGUCGc -3'
miRNA:   3'- uaugcaCCGCG-CGUGGCG---CGGCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.