miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 45656 0.69 0.235628
Target:  5'- --uCGUucGGCGCGCaaguguuuGCCGCGCCGUa-- -3'
miRNA:   3'- uauGCA--CCGCGCG--------UGGCGCGGCAgcu -5'
24292 3' -60.8 NC_005263.2 + 45467 0.7 0.2297
Target:  5'- gAUACGccGGCaaGCGCgaugaACCGCGCgGUCGGc -3'
miRNA:   3'- -UAUGCa-CCG--CGCG-----UGGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 16356 0.7 0.223898
Target:  5'- -gACGaaGCGCGCgGCCGCGUCGcUCGGc -3'
miRNA:   3'- uaUGCacCGCGCG-UGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 16487 0.7 0.212667
Target:  5'- -----cGGCGCuGCGCCGCgcgGCCGUCGc -3'
miRNA:   3'- uaugcaCCGCG-CGUGGCG---CGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 39138 0.71 0.191656
Target:  5'- -aACGUcGGCG-GCACCGUGUCGgCGAc -3'
miRNA:   3'- uaUGCA-CCGCgCGUGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 21183 0.71 0.175715
Target:  5'- cGUGCGUGGCGagcuguucCGCAuCCGCGUugcacaaauccuguCGUCGAc -3'
miRNA:   3'- -UAUGCACCGC--------GCGU-GGCGCG--------------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 36149 0.72 0.146943
Target:  5'- aGUACG-GGCGCGCGCUcgagGCGaaCGUCGAu -3'
miRNA:   3'- -UAUGCaCCGCGCGUGG----CGCg-GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20984 0.73 0.143036
Target:  5'- gGUACGgguucGGUGCaauuCGCCGCGCCcGUCGAa -3'
miRNA:   3'- -UAUGCa----CCGCGc---GUGGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 31255 0.73 0.139224
Target:  5'- -cGCGcGGCGCgGCGCCGgGCagGUCGAa -3'
miRNA:   3'- uaUGCaCCGCG-CGUGGCgCGg-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 6247 0.69 0.235628
Target:  5'- -cGCGgccaGGCGCGguC-GUGCCGUCGGg -3'
miRNA:   3'- uaUGCa---CCGCGCguGgCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 35548 0.69 0.235628
Target:  5'- -cGCG-GGCGgGCGCUacgGCGCCGcCGGc -3'
miRNA:   3'- uaUGCaCCGCgCGUGG---CGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 48059 0.69 0.266549
Target:  5'- gGUACGaaGGCGCGCccgaccuGCCGCGCCagUGAc -3'
miRNA:   3'- -UAUGCa-CCGCGCG-------UGGCGCGGcaGCU- -5'
24292 3' -60.8 NC_005263.2 + 41162 0.69 0.260633
Target:  5'- -cGCGcGGCGUGgGCgGcCGUCGUCGAu -3'
miRNA:   3'- uaUGCaCCGCGCgUGgC-GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 33573 0.69 0.256749
Target:  5'- -cGCGUcuacaucgaaaaagcGGCGaacgGCGCCGCGCUGaUCGAu -3'
miRNA:   3'- uaUGCA---------------CCGCg---CGUGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 33673 0.69 0.254186
Target:  5'- -----aGGCGCGCGCgCaCGCCGUCGc -3'
miRNA:   3'- uaugcaCCGCGCGUG-GcGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 3174 0.69 0.254186
Target:  5'- --uCGUGGCGCggaauaacugccGCugCGCGUCGgCGAg -3'
miRNA:   3'- uauGCACCGCG------------CGugGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 1418 0.69 0.254186
Target:  5'- --uCGUcGGCGCGCGCCGCcuugGCUGcgcgCGAg -3'
miRNA:   3'- uauGCA-CCGCGCGUGGCG----CGGCa---GCU- -5'
24292 3' -60.8 NC_005263.2 + 32379 0.69 0.24787
Target:  5'- -gAUG-GGCGCuaaCGCCGCGCUgGUCGAa -3'
miRNA:   3'- uaUGCaCCGCGc--GUGGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 18868 0.69 0.247245
Target:  5'- -cGCGUGccucggcGCGcCGCugCGCGCCGaCGGc -3'
miRNA:   3'- uaUGCAC-------CGC-GCGugGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 18331 0.69 0.238035
Target:  5'- -gACGUaacGGUGCGCAacaagugagccgcuuCCGCaCCGUCGAa -3'
miRNA:   3'- uaUGCA---CCGCGCGU---------------GGCGcGGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.