Results 1 - 20 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 17620 | 0.67 | 0.348543 |
Target: 5'- ---aGUGGCGCGggUCGCGCa-UCGAu -3' miRNA: 3'- uaugCACCGCGCguGGCGCGgcAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 27918 | 0.66 | 0.373585 |
Target: 5'- -gACGgcGGCGCGuCGCCcgGCGCgcucuCGUCGAu -3' miRNA: 3'- uaUGCa-CCGCGC-GUGG--CGCG-----GCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 28219 | 0.66 | 0.365104 |
Target: 5'- uGUugGUGGCcugcaucggccGCGCucGCCGCGCuCGcCGu -3' miRNA: 3'- -UAugCACCG-----------CGCG--UGGCGCG-GCaGCu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 35519 | 0.66 | 0.365104 |
Target: 5'- -cAC-UGGCGCGCcgACUGCGCCcggCGGc -3' miRNA: 3'- uaUGcACCGCGCG--UGGCGCGGca-GCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 47473 | 0.67 | 0.356756 |
Target: 5'- -cACG-GGCGUcacuggcaGCACCGgccCGCUGUCGGg -3' miRNA: 3'- uaUGCaCCGCG--------CGUGGC---GCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 6055 | 0.67 | 0.348543 |
Target: 5'- cGUugGcGGCGCGCuucACgCGCGCCGa--- -3' miRNA: 3'- -UAugCaCCGCGCG---UG-GCGCGGCagcu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 35992 | 0.67 | 0.348543 |
Target: 5'- -cGCGUaauGGCGCGCgcGCCGCugcgcaugccagGCCG-CGAc -3' miRNA: 3'- uaUGCA---CCGCGCG--UGGCG------------CGGCaGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 40879 | 0.67 | 0.348543 |
Target: 5'- -cGCGUGcacCGCAUgGCGCCGUCGc -3' miRNA: 3'- uaUGCACcgcGCGUGgCGCGGCAGCu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 15187 | 0.67 | 0.348543 |
Target: 5'- -gACGcga-GCGCGCCGCGCgaCGUCGGc -3' miRNA: 3'- uaUGCaccgCGCGUGGCGCG--GCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 29018 | 0.66 | 0.373585 |
Target: 5'- aGUGCGU--UGCGCACCGCgacGCCGUacUGAc -3' miRNA: 3'- -UAUGCAccGCGCGUGGCG---CGGCA--GCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 32756 | 0.66 | 0.3822 |
Target: 5'- uUGCGcGGCGCaauGCgACCGaCGCaaaGUCGAu -3' miRNA: 3'- uAUGCaCCGCG---CG-UGGC-GCGg--CAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 32550 | 0.66 | 0.3822 |
Target: 5'- -gGCGUucaGcGCGCGCGuCUGCGCCGagaUUGAu -3' miRNA: 3'- uaUGCA---C-CGCGCGU-GGCGCGGC---AGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 24697 | 0.66 | 0.408823 |
Target: 5'- -aACGgcGGCGCGCcgaaCGUGCCGggCGGc -3' miRNA: 3'- uaUGCa-CCGCGCGug--GCGCGGCa-GCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 6328 | 0.66 | 0.408823 |
Target: 5'- -----cGGCGCGCGagucgcCCGCGCCGaUCu- -3' miRNA: 3'- uaugcaCCGCGCGU------GGCGCGGC-AGcu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 28093 | 0.66 | 0.39982 |
Target: 5'- cGUGUGuUGGCGCgGCcgAUCGCGUCGUUGAc -3' miRNA: 3'- -UAUGC-ACCGCG-CG--UGGCGCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 15773 | 0.66 | 0.39982 |
Target: 5'- -gGCGUGuucaacaaaGUGCGuCGCC-CGUCGUCGAu -3' miRNA: 3'- uaUGCAC---------CGCGC-GUGGcGCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 42944 | 0.66 | 0.39982 |
Target: 5'- -----aGGCGCaaACCGCGCUGcUCGAc -3' miRNA: 3'- uaugcaCCGCGcgUGGCGCGGC-AGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 14398 | 0.66 | 0.39982 |
Target: 5'- cUGCGaaaggugucUGGCGCGUauugccGCCGCGCUG-CGc -3' miRNA: 3'- uAUGC---------ACCGCGCG------UGGCGCGGCaGCu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 4198 | 0.66 | 0.39982 |
Target: 5'- -aACGUGaagcaguacGCGCGCGucgaCGgGUCGUCGAg -3' miRNA: 3'- uaUGCAC---------CGCGCGUg---GCgCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 5472 | 0.66 | 0.390945 |
Target: 5'- -cACGUcGGCGCuGCuuCGUGCUGcUCGAc -3' miRNA: 3'- uaUGCA-CCGCG-CGugGCGCGGC-AGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home