miRNA display CGI


Results 41 - 60 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 28093 0.66 0.39982
Target:  5'- cGUGUGuUGGCGCgGCcgAUCGCGUCGUUGAc -3'
miRNA:   3'- -UAUGC-ACCGCG-CG--UGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 6328 0.66 0.408823
Target:  5'- -----cGGCGCGCGagucgcCCGCGCCGaUCu- -3'
miRNA:   3'- uaugcaCCGCGCGU------GGCGCGGC-AGcu -5'
24292 3' -60.8 NC_005263.2 + 24697 0.66 0.408823
Target:  5'- -aACGgcGGCGCGCcgaaCGUGCCGggCGGc -3'
miRNA:   3'- uaUGCa-CCGCGCGug--GCGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 27225 0.66 0.408823
Target:  5'- cGUGCGccuccugccacUGGCGCaGCGCCGuUGCgacgcucgCGUCGAa -3'
miRNA:   3'- -UAUGC-----------ACCGCG-CGUGGC-GCG--------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 28219 0.66 0.365104
Target:  5'- uGUugGUGGCcugcaucggccGCGCucGCCGCGCuCGcCGu -3'
miRNA:   3'- -UAugCACCG-----------CGCG--UGGCGCG-GCaGCu -5'
24292 3' -60.8 NC_005263.2 + 35519 0.66 0.365104
Target:  5'- -cAC-UGGCGCGCcgACUGCGCCcggCGGc -3'
miRNA:   3'- uaUGcACCGCGCG--UGGCGCGGca-GCU- -5'
24292 3' -60.8 NC_005263.2 + 47473 0.67 0.356756
Target:  5'- -cACG-GGCGUcacuggcaGCACCGgccCGCUGUCGGg -3'
miRNA:   3'- uaUGCaCCGCG--------CGUGGC---GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 3244 0.68 0.30878
Target:  5'- -cAgGUaGGCGCGauCGCCGCGCagacaggCGUCGAg -3'
miRNA:   3'- uaUgCA-CCGCGC--GUGGCGCG-------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 35165 0.68 0.309526
Target:  5'- cUACGUGcGCGCGUACCaGCGCaaugCGc -3'
miRNA:   3'- uAUGCAC-CGCGCGUGG-CGCGgca-GCu -5'
24292 3' -60.8 NC_005263.2 + 38629 0.68 0.309526
Target:  5'- -aGCGccGGCGCGaaugaaGCCGCGUCGcgcaUCGAc -3'
miRNA:   3'- uaUGCa-CCGCGCg-----UGGCGCGGC----AGCU- -5'
24292 3' -60.8 NC_005263.2 + 9573 0.67 0.317055
Target:  5'- -aACGUGuccagGCGCugCGUGCCGUCc- -3'
miRNA:   3'- uaUGCACcg---CGCGugGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 3332 0.67 0.323949
Target:  5'- -aACGUcuGCGCGCcgccggcGCCGCGCgCgGUCGAg -3'
miRNA:   3'- uaUGCAc-CGCGCG-------UGGCGCG-G-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 34819 0.67 0.324722
Target:  5'- -aAC-UGGCuGCGCA-CGCGCCaGUCGGu -3'
miRNA:   3'- uaUGcACCG-CGCGUgGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 29769 0.67 0.332526
Target:  5'- cUGCG-GGUucaGCAgCGUGCCGUCGGc -3'
miRNA:   3'- uAUGCaCCGcg-CGUgGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 38685 0.67 0.332526
Target:  5'- gGUGCGcGGCuaacaGCGCCGCaGCCG-CGAu -3'
miRNA:   3'- -UAUGCaCCGcg---CGUGGCG-CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 17620 0.67 0.348543
Target:  5'- ---aGUGGCGCGggUCGCGCa-UCGAu -3'
miRNA:   3'- uaugCACCGCGCguGGCGCGgcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 15187 0.67 0.348543
Target:  5'- -gACGcga-GCGCGCCGCGCgaCGUCGGc -3'
miRNA:   3'- uaUGCaccgCGCGUGGCGCG--GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 40879 0.67 0.348543
Target:  5'- -cGCGUGcacCGCAUgGCGCCGUCGc -3'
miRNA:   3'- uaUGCACcgcGCGUGgCGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 35992 0.67 0.348543
Target:  5'- -cGCGUaauGGCGCGCgcGCCGCugcgcaugccagGCCG-CGAc -3'
miRNA:   3'- uaUGCA---CCGCGCG--UGGCG------------CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 6055 0.67 0.348543
Target:  5'- cGUugGcGGCGCGCuucACgCGCGCCGa--- -3'
miRNA:   3'- -UAugCaCCGCGCG---UG-GCGCGGCagcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.