Results 101 - 112 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 21187 | 0.68 | 0.302133 |
Target: 5'- -gACGcGGaCGCGCGCgGCGCgGgCGAg -3' miRNA: 3'- uaUGCaCC-GCGCGUGgCGCGgCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 16855 | 0.68 | 0.302133 |
Target: 5'- cUGCccGGCGcCGCGCCGCGCgGaacCGAa -3' miRNA: 3'- uAUGcaCCGC-GCGUGGCGCGgCa--GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 23905 | 0.68 | 0.301402 |
Target: 5'- --uCGUGaGCGCGC-CCGCGagcgugaCCGUCGc -3' miRNA: 3'- uauGCAC-CGCGCGuGGCGC-------GGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 42654 | 0.68 | 0.294878 |
Target: 5'- -gACGUGGCaaccgauCGCuACUGCGCCGaCGGa -3' miRNA: 3'- uaUGCACCGc------GCG-UGGCGCGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 11473 | 0.68 | 0.294878 |
Target: 5'- -cGCGcUGcCGCGCACUguuaaacuGCGCCGUCGc -3' miRNA: 3'- uaUGC-ACcGCGCGUGG--------CGCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 4851 | 0.68 | 0.287758 |
Target: 5'- --cCGUacGCGCGCGCCGUGCCGa--- -3' miRNA: 3'- uauGCAc-CGCGCGUGGCGCGGCagcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 11611 | 0.68 | 0.287758 |
Target: 5'- ---aGUGGCGCaGCACUuCGCCuUCGAc -3' miRNA: 3'- uaugCACCGCG-CGUGGcGCGGcAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 44663 | 0.69 | 0.235628 |
Target: 5'- gAUGCGUcGCGCGCGCCGaagaaGUCGgCGGc -3' miRNA: 3'- -UAUGCAcCGCGCGUGGCg----CGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 4659 | 0.7 | 0.232056 |
Target: 5'- -gACGggcaggccGGCGCGCgggucuuucgucaggAUCGUGCCGUCGGc -3' miRNA: 3'- uaUGCa-------CCGCGCG---------------UGGCGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 20190 | 0.7 | 0.212667 |
Target: 5'- -cGCGccgGGCGaCGCGCC--GCCGUCGAg -3' miRNA: 3'- uaUGCa--CCGC-GCGUGGcgCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 25569 | 0.71 | 0.196732 |
Target: 5'- -gACGUcGGCGUccGCGCCGC-CCGUCa- -3' miRNA: 3'- uaUGCA-CCGCG--CGUGGCGcGGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 26860 | 1.06 | 0.000401 |
Target: 5'- aAUACGUGGCGCGCACCGCGCCGUCGAu -3' miRNA: 3'- -UAUGCACCGCGCGUGGCGCGGCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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