miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 5' -49 NC_005263.2 + 18606 0.66 0.968001
Target:  5'- --aCGACGccauGCGcGGGUUcGUGCAGCGg -3'
miRNA:   3'- ccaGCUGC----UGU-CCUAAaCACGUUGCg -5'
24292 5' -49 NC_005263.2 + 8997 0.66 0.964433
Target:  5'- uGGcCGGCcaccacgucccACAGGAUUUucGUGCcGCGCg -3'
miRNA:   3'- -CCaGCUGc----------UGUCCUAAA--CACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 43947 0.66 0.964433
Target:  5'- uGUCGACGGC-GGAcUUGUGgGAaGUc -3'
miRNA:   3'- cCAGCUGCUGuCCUaAACACgUUgCG- -5'
24292 5' -49 NC_005263.2 + 35908 0.66 0.958984
Target:  5'- cGGUCGAgacACAGGcgaccaugGCGACGCg -3'
miRNA:   3'- -CCAGCUgc-UGUCCuaaaca--CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 37807 0.66 0.956482
Target:  5'- cGUUGACGACGGGc---GcGCAuccgGCGCu -3'
miRNA:   3'- cCAGCUGCUGUCCuaaaCaCGU----UGCG- -5'
24292 5' -49 NC_005263.2 + 26326 0.66 0.956482
Target:  5'- cGGUCGGCGugaaggucgguuGCGGGAcgUUGgucguggucaUGC-GCGCg -3'
miRNA:   3'- -CCAGCUGC------------UGUCCUa-AAC----------ACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 29006 0.66 0.956482
Target:  5'- cGGcCGAcCGGCAGuGcgUUGcGCAcCGCg -3'
miRNA:   3'- -CCaGCU-GCUGUC-CuaAACaCGUuGCG- -5'
24292 5' -49 NC_005263.2 + 21032 0.66 0.956482
Target:  5'- -aUCGAUGGCAacGGcgUgcagcaUGCAACGCa -3'
miRNA:   3'- ccAGCUGCUGU--CCuaAac----ACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 24596 0.66 0.952085
Target:  5'- uGUCgGGCG-CAGGcggUG-GCGGCGCa -3'
miRNA:   3'- cCAG-CUGCuGUCCuaaACaCGUUGCG- -5'
24292 5' -49 NC_005263.2 + 36158 0.66 0.951171
Target:  5'- aGGUUGGCGACGGccugcgcGAccgGUGCGaccuucaACGCu -3'
miRNA:   3'- -CCAGCUGCUGUC-------CUaaaCACGU-------UGCG- -5'
24292 5' -49 NC_005263.2 + 25516 0.67 0.947399
Target:  5'- uGGUCGGCGucuCGGGcuggcUUGgcGCAgaGCGCa -3'
miRNA:   3'- -CCAGCUGCu--GUCCua---AACa-CGU--UGCG- -5'
24292 5' -49 NC_005263.2 + 20103 0.67 0.946427
Target:  5'- uGGUCGACcagcgucgccgcGCAGGGUUacgGCAaGCGCg -3'
miRNA:   3'- -CCAGCUGc-----------UGUCCUAAacaCGU-UGCG- -5'
24292 5' -49 NC_005263.2 + 8120 0.67 0.94242
Target:  5'- cGUCGGCGGCAGGcccauaUGCAggacagcuucuuGCGUg -3'
miRNA:   3'- cCAGCUGCUGUCCuaaac-ACGU------------UGCG- -5'
24292 5' -49 NC_005263.2 + 21161 0.67 0.941389
Target:  5'- --cCGACGGCAGcGAcgucaucaacGUGCGugGCg -3'
miRNA:   3'- ccaGCUGCUGUC-CUaaa-------CACGUugCG- -5'
24292 5' -49 NC_005263.2 + 5615 0.67 0.937145
Target:  5'- aGGcCGuGCGGCAG--UUUGcagGCAACGCg -3'
miRNA:   3'- -CCaGC-UGCUGUCcuAAACa--CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 40439 0.67 0.937145
Target:  5'- cGGUUGAaGACGGGcaaagGccGCAACGCc -3'
miRNA:   3'- -CCAGCUgCUGUCCuaaa-Ca-CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 20511 0.67 0.931571
Target:  5'- -aUCGACGAUcgcguAGGAUUcgucgaUGUGCugcCGCu -3'
miRNA:   3'- ccAGCUGCUG-----UCCUAA------ACACGuu-GCG- -5'
24292 5' -49 NC_005263.2 + 3531 0.67 0.931571
Target:  5'- -aUCGGCGuaaaGCGGGAUcagcgcaGUGCcGCGCa -3'
miRNA:   3'- ccAGCUGC----UGUCCUAaa-----CACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 31615 0.67 0.925696
Target:  5'- cGGUCG-CGACGGccgcgcgGcGCAGCGCc -3'
miRNA:   3'- -CCAGCuGCUGUCcuaaa--CaCGUUGCG- -5'
24292 5' -49 NC_005263.2 + 25368 0.67 0.925696
Target:  5'- -cUCGGCGGCcuGAUcgGUGCGcucauGCGCc -3'
miRNA:   3'- ccAGCUGCUGucCUAaaCACGU-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.