Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 5' | -49 | NC_005263.2 | + | 25368 | 0.67 | 0.925696 |
Target: 5'- -cUCGGCGGCcuGAUcgGUGCGcucauGCGCc -3' miRNA: 3'- ccAGCUGCUGucCUAaaCACGU-----UGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 35612 | 0.68 | 0.906274 |
Target: 5'- aGcCGGCGcGCAGGAUgcc-GCAAUGCg -3' miRNA: 3'- cCaGCUGC-UGUCCUAaacaCGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 1575 | 0.68 | 0.891848 |
Target: 5'- cGGUauaGACGGCAcgcuuGGAcgUGccgaGCAGCGCg -3' miRNA: 3'- -CCAg--CUGCUGU-----CCUaaACa---CGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 7392 | 0.68 | 0.891848 |
Target: 5'- -aUCGAU-ACGGGGUUcuccaGUGCGAUGCg -3' miRNA: 3'- ccAGCUGcUGUCCUAAa----CACGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 2700 | 0.69 | 0.884203 |
Target: 5'- cGGcCGcuCGGCAGGugcaUGcGCAGCGCg -3' miRNA: 3'- -CCaGCu-GCUGUCCuaa-ACaCGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 27003 | 0.69 | 0.876277 |
Target: 5'- gGGUaGGCGuCAuGGucagUUGUGCGGCGUg -3' miRNA: 3'- -CCAgCUGCuGU-CCua--AACACGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 27773 | 0.7 | 0.841913 |
Target: 5'- aGGUgCGGCGGCAGGcca--UGCuuCGCg -3' miRNA: 3'- -CCA-GCUGCUGUCCuaaacACGuuGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 24789 | 0.7 | 0.8327 |
Target: 5'- cGUCGGCGGCucgccGGGcgUcG-GCGGCGCg -3' miRNA: 3'- cCAGCUGCUG-----UCCuaAaCaCGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 46955 | 0.7 | 0.823257 |
Target: 5'- ---aGGCGAUcGGAUacgcgGUGCAACGCc -3' miRNA: 3'- ccagCUGCUGuCCUAaa---CACGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 3234 | 0.7 | 0.813596 |
Target: 5'- cGGgCGACGACAGGuag-GcGCGAuCGCc -3' miRNA: 3'- -CCaGCUGCUGUCCuaaaCaCGUU-GCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 1661 | 0.71 | 0.762426 |
Target: 5'- uGGUCGAcCGGCAGcuUUU-UGUAGCGCg -3' miRNA: 3'- -CCAGCU-GCUGUCcuAAAcACGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 4243 | 0.72 | 0.729881 |
Target: 5'- cGUCGGCGuCAGGA----UGCcGCGCa -3' miRNA: 3'- cCAGCUGCuGUCCUaaacACGuUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 10061 | 0.72 | 0.707631 |
Target: 5'- gGGUCGGCGcACuGGAagccgaGCGACGCg -3' miRNA: 3'- -CCAGCUGC-UGuCCUaaaca-CGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 34676 | 0.73 | 0.700889 |
Target: 5'- cGUCGACGugGuGGAUgaucggcagcgaagUGcaUGCGACGCg -3' miRNA: 3'- cCAGCUGCugU-CCUAa-------------AC--ACGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 23050 | 0.74 | 0.638206 |
Target: 5'- cGGUCGACGuCGGGAUcgucgugUUGccUGCcGCGUa -3' miRNA: 3'- -CCAGCUGCuGUCCUA-------AAC--ACGuUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 8862 | 0.75 | 0.569653 |
Target: 5'- -cUCGGcCGACGGGAUacgcggcccgugcUgccgGUGCAGCGCg -3' miRNA: 3'- ccAGCU-GCUGUCCUA-------------Aa---CACGUUGCG- -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 8692 | 0.8 | 0.32975 |
Target: 5'- cGGUCGACGACAGG-----UGCGGCGa -3' miRNA: 3'- -CCAGCUGCUGUCCuaaacACGUUGCg -5' |
|||||||
24292 | 5' | -49 | NC_005263.2 | + | 26896 | 1.17 | 0.00137 |
Target: 5'- cGGUCGACGACAGGAUUUGUGCAACGCg -3' miRNA: 3'- -CCAGCUGCUGUCCUAAACACGUUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home