miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 5' -49 NC_005263.2 + 1575 0.68 0.891848
Target:  5'- cGGUauaGACGGCAcgcuuGGAcgUGccgaGCAGCGCg -3'
miRNA:   3'- -CCAg--CUGCUGU-----CCUaaACa---CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 1661 0.71 0.762426
Target:  5'- uGGUCGAcCGGCAGcuUUU-UGUAGCGCg -3'
miRNA:   3'- -CCAGCU-GCUGUCcuAAAcACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 2700 0.69 0.884203
Target:  5'- cGGcCGcuCGGCAGGugcaUGcGCAGCGCg -3'
miRNA:   3'- -CCaGCu-GCUGUCCuaa-ACaCGUUGCG- -5'
24292 5' -49 NC_005263.2 + 3234 0.7 0.813596
Target:  5'- cGGgCGACGACAGGuag-GcGCGAuCGCc -3'
miRNA:   3'- -CCaGCUGCUGUCCuaaaCaCGUU-GCG- -5'
24292 5' -49 NC_005263.2 + 3531 0.67 0.931571
Target:  5'- -aUCGGCGuaaaGCGGGAUcagcgcaGUGCcGCGCa -3'
miRNA:   3'- ccAGCUGC----UGUCCUAaa-----CACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 4243 0.72 0.729881
Target:  5'- cGUCGGCGuCAGGA----UGCcGCGCa -3'
miRNA:   3'- cCAGCUGCuGUCCUaaacACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 5615 0.67 0.937145
Target:  5'- aGGcCGuGCGGCAG--UUUGcagGCAACGCg -3'
miRNA:   3'- -CCaGC-UGCUGUCcuAAACa--CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 7392 0.68 0.891848
Target:  5'- -aUCGAU-ACGGGGUUcuccaGUGCGAUGCg -3'
miRNA:   3'- ccAGCUGcUGUCCUAAa----CACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 8120 0.67 0.94242
Target:  5'- cGUCGGCGGCAGGcccauaUGCAggacagcuucuuGCGUg -3'
miRNA:   3'- cCAGCUGCUGUCCuaaac-ACGU------------UGCG- -5'
24292 5' -49 NC_005263.2 + 8692 0.8 0.32975
Target:  5'- cGGUCGACGACAGG-----UGCGGCGa -3'
miRNA:   3'- -CCAGCUGCUGUCCuaaacACGUUGCg -5'
24292 5' -49 NC_005263.2 + 8862 0.75 0.569653
Target:  5'- -cUCGGcCGACGGGAUacgcggcccgugcUgccgGUGCAGCGCg -3'
miRNA:   3'- ccAGCU-GCUGUCCUA-------------Aa---CACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 8997 0.66 0.964433
Target:  5'- uGGcCGGCcaccacgucccACAGGAUUUucGUGCcGCGCg -3'
miRNA:   3'- -CCaGCUGc----------UGUCCUAAA--CACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 10061 0.72 0.707631
Target:  5'- gGGUCGGCGcACuGGAagccgaGCGACGCg -3'
miRNA:   3'- -CCAGCUGC-UGuCCUaaaca-CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 18606 0.66 0.968001
Target:  5'- --aCGACGccauGCGcGGGUUcGUGCAGCGg -3'
miRNA:   3'- ccaGCUGC----UGU-CCUAAaCACGUUGCg -5'
24292 5' -49 NC_005263.2 + 20103 0.67 0.946427
Target:  5'- uGGUCGACcagcgucgccgcGCAGGGUUacgGCAaGCGCg -3'
miRNA:   3'- -CCAGCUGc-----------UGUCCUAAacaCGU-UGCG- -5'
24292 5' -49 NC_005263.2 + 20511 0.67 0.931571
Target:  5'- -aUCGACGAUcgcguAGGAUUcgucgaUGUGCugcCGCu -3'
miRNA:   3'- ccAGCUGCUG-----UCCUAA------ACACGuu-GCG- -5'
24292 5' -49 NC_005263.2 + 21032 0.66 0.956482
Target:  5'- -aUCGAUGGCAacGGcgUgcagcaUGCAACGCa -3'
miRNA:   3'- ccAGCUGCUGU--CCuaAac----ACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 21161 0.67 0.941389
Target:  5'- --cCGACGGCAGcGAcgucaucaacGUGCGugGCg -3'
miRNA:   3'- ccaGCUGCUGUC-CUaaa-------CACGUugCG- -5'
24292 5' -49 NC_005263.2 + 23050 0.74 0.638206
Target:  5'- cGGUCGACGuCGGGAUcgucgugUUGccUGCcGCGUa -3'
miRNA:   3'- -CCAGCUGCuGUCCUA-------AAC--ACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 23446 0.67 0.925696
Target:  5'- -uUCGGCGAuCGGGGUgaGUGCuAUGUc -3'
miRNA:   3'- ccAGCUGCU-GUCCUAaaCACGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.