miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 5' -49 NC_005263.2 + 26896 1.17 0.00137
Target:  5'- cGGUCGACGACAGGAUUUGUGCAACGCg -3'
miRNA:   3'- -CCAGCUGCUGUCCUAAACACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 8120 0.67 0.94242
Target:  5'- cGUCGGCGGCAGGcccauaUGCAggacagcuucuuGCGUg -3'
miRNA:   3'- cCAGCUGCUGUCCuaaac-ACGU------------UGCG- -5'
24292 5' -49 NC_005263.2 + 3531 0.67 0.931571
Target:  5'- -aUCGGCGuaaaGCGGGAUcagcgcaGUGCcGCGCa -3'
miRNA:   3'- ccAGCUGC----UGUCCUAaa-----CACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 31615 0.67 0.925696
Target:  5'- cGGUCG-CGACGGccgcgcgGcGCAGCGCc -3'
miRNA:   3'- -CCAGCuGCUGUCcuaaa--CaCGUUGCG- -5'
24292 5' -49 NC_005263.2 + 27003 0.69 0.876277
Target:  5'- gGGUaGGCGuCAuGGucagUUGUGCGGCGUg -3'
miRNA:   3'- -CCAgCUGCuGU-CCua--AACACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 27773 0.7 0.841913
Target:  5'- aGGUgCGGCGGCAGGcca--UGCuuCGCg -3'
miRNA:   3'- -CCA-GCUGCUGUCCuaaacACGuuGCG- -5'
24292 5' -49 NC_005263.2 + 43947 0.66 0.964433
Target:  5'- uGUCGACGGC-GGAcUUGUGgGAaGUc -3'
miRNA:   3'- cCAGCUGCUGuCCUaAACACgUUgCG- -5'
24292 5' -49 NC_005263.2 + 26326 0.66 0.956482
Target:  5'- cGGUCGGCGugaaggucgguuGCGGGAcgUUGgucguggucaUGC-GCGCg -3'
miRNA:   3'- -CCAGCUGC------------UGUCCUa-AAC----------ACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 40439 0.67 0.937145
Target:  5'- cGGUUGAaGACGGGcaaagGccGCAACGCc -3'
miRNA:   3'- -CCAGCUgCUGUCCuaaa-Ca-CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 7392 0.68 0.891848
Target:  5'- -aUCGAU-ACGGGGUUcuccaGUGCGAUGCg -3'
miRNA:   3'- ccAGCUGcUGUCCUAAa----CACGUUGCG- -5'
24292 5' -49 NC_005263.2 + 8692 0.8 0.32975
Target:  5'- cGGUCGACGACAGG-----UGCGGCGa -3'
miRNA:   3'- -CCAGCUGCUGUCCuaaacACGUUGCg -5'
24292 5' -49 NC_005263.2 + 35908 0.66 0.958984
Target:  5'- cGGUCGAgacACAGGcgaccaugGCGACGCg -3'
miRNA:   3'- -CCAGCUgc-UGUCCuaaaca--CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 23050 0.74 0.638206
Target:  5'- cGGUCGACGuCGGGAUcgucgugUUGccUGCcGCGUa -3'
miRNA:   3'- -CCAGCUGCuGUCCUA-------AAC--ACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 5615 0.67 0.937145
Target:  5'- aGGcCGuGCGGCAG--UUUGcagGCAACGCg -3'
miRNA:   3'- -CCaGC-UGCUGUCcuAAACa--CGUUGCG- -5'
24292 5' -49 NC_005263.2 + 8997 0.66 0.964433
Target:  5'- uGGcCGGCcaccacgucccACAGGAUUUucGUGCcGCGCg -3'
miRNA:   3'- -CCaGCUGc----------UGUCCUAAA--CACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 4243 0.72 0.729881
Target:  5'- cGUCGGCGuCAGGA----UGCcGCGCa -3'
miRNA:   3'- cCAGCUGCuGUCCUaaacACGuUGCG- -5'
24292 5' -49 NC_005263.2 + 36158 0.66 0.951171
Target:  5'- aGGUUGGCGACGGccugcgcGAccgGUGCGaccuucaACGCu -3'
miRNA:   3'- -CCAGCUGCUGUC-------CUaaaCACGU-------UGCG- -5'
24292 5' -49 NC_005263.2 + 24789 0.7 0.8327
Target:  5'- cGUCGGCGGCucgccGGGcgUcG-GCGGCGCg -3'
miRNA:   3'- cCAGCUGCUG-----UCCuaAaCaCGUUGCG- -5'
24292 5' -49 NC_005263.2 + 2700 0.69 0.884203
Target:  5'- cGGcCGcuCGGCAGGugcaUGcGCAGCGCg -3'
miRNA:   3'- -CCaGCu-GCUGUCCuaa-ACaCGUUGCG- -5'
24292 5' -49 NC_005263.2 + 1575 0.68 0.891848
Target:  5'- cGGUauaGACGGCAcgcuuGGAcgUGccgaGCAGCGCg -3'
miRNA:   3'- -CCAg--CUGCUGU-----CCUaaACa---CGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.