miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24293 3' -55.4 NC_005263.2 + 37933 0.66 0.633214
Target:  5'- cUGcUCGCGauUCGCGCucUCGGC-GACGCc- -3'
miRNA:   3'- -AC-AGCGC--AGCGCG--AGCCGuUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 40284 0.66 0.633214
Target:  5'- -uUCGCGguugCGCagauGCUCGGCGuauAACGCg- -3'
miRNA:   3'- acAGCGCa---GCG----CGAGCCGU---UUGUGac -5'
24293 3' -55.4 NC_005263.2 + 46103 0.66 0.633214
Target:  5'- cGUCGgGUaucaucCGCGC-CGGCGuGACGCUu -3'
miRNA:   3'- aCAGCgCA------GCGCGaGCCGU-UUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 28439 0.66 0.633214
Target:  5'- cGUCGCGggcaGCGCggcguaGGCAuAGCGCa- -3'
miRNA:   3'- aCAGCGCag--CGCGag----CCGU-UUGUGac -5'
24293 3' -55.4 NC_005263.2 + 40899 0.67 0.622092
Target:  5'- gGUCGCcggcgaugGUCGCGgaCUCGGUAucUACUGc -3'
miRNA:   3'- aCAGCG--------CAGCGC--GAGCCGUuuGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 45456 0.67 0.622092
Target:  5'- gUGUCGcCGcCGauaCGC-CGGCAAGCGCg- -3'
miRNA:   3'- -ACAGC-GCaGC---GCGaGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 8851 0.67 0.622092
Target:  5'- -aUCGCG-CGCaGCUCGGCcGACGg-- -3'
miRNA:   3'- acAGCGCaGCG-CGAGCCGuUUGUgac -5'
24293 3' -55.4 NC_005263.2 + 31121 0.67 0.622092
Target:  5'- gGUCGCGUCGCuca-GGUAuucgccgaAACGCUGc -3'
miRNA:   3'- aCAGCGCAGCGcgagCCGU--------UUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 27980 0.67 0.615424
Target:  5'- cGUaC-CGUCGCGCUugccguaacccugcgCGGC-GACGCUGg -3'
miRNA:   3'- aCA-GcGCAGCGCGA---------------GCCGuUUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 678 0.67 0.61098
Target:  5'- gGUaGUGccCGUGCUCGGUGAGCGCg- -3'
miRNA:   3'- aCAgCGCa-GCGCGAGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 17396 0.67 0.61098
Target:  5'- cGgCGCGgccgCGCGCcUGGCGGGCGgUGu -3'
miRNA:   3'- aCaGCGCa---GCGCGaGCCGUUUGUgAC- -5'
24293 3' -55.4 NC_005263.2 + 38936 0.67 0.599886
Target:  5'- -cUCGaCGUCGCGCaUCGGCuucguGCAUc- -3'
miRNA:   3'- acAGC-GCAGCGCG-AGCCGuu---UGUGac -5'
24293 3' -55.4 NC_005263.2 + 8532 0.67 0.599886
Target:  5'- -uUCGuCGUCG-GCUCGGCGGugAUg- -3'
miRNA:   3'- acAGC-GCAGCgCGAGCCGUUugUGac -5'
24293 3' -55.4 NC_005263.2 + 12096 0.67 0.599886
Target:  5'- cGUCGCGgccuggcaUGCGCagCGGCGcGCGCg- -3'
miRNA:   3'- aCAGCGCa-------GCGCGa-GCCGUuUGUGac -5'
24293 3' -55.4 NC_005263.2 + 6635 0.67 0.598779
Target:  5'- gGUCGagcaGUCGCGCgUCGGUcgcuucacgugcgGGGCGCa- -3'
miRNA:   3'- aCAGCg---CAGCGCG-AGCCG-------------UUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 32916 0.67 0.597671
Target:  5'- uUGcCGaCGUCGCGCggCGGCucgcgucgauCACUGc -3'
miRNA:   3'- -ACaGC-GCAGCGCGa-GCCGuuu-------GUGAC- -5'
24293 3' -55.4 NC_005263.2 + 10746 0.67 0.588821
Target:  5'- aGUCGCGcaCGCGCaugcggccgUCGGCAucaaaGCUGc -3'
miRNA:   3'- aCAGCGCa-GCGCG---------AGCCGUuug--UGAC- -5'
24293 3' -55.4 NC_005263.2 + 9024 0.67 0.588821
Target:  5'- -uUCGUGcCGCGCgaCGGCGAGCcgGCUa -3'
miRNA:   3'- acAGCGCaGCGCGa-GCCGUUUG--UGAc -5'
24293 3' -55.4 NC_005263.2 + 17153 0.67 0.588821
Target:  5'- gGUCGaCGUCGCgguGUUCGGCuGGCAg-- -3'
miRNA:   3'- aCAGC-GCAGCG---CGAGCCGuUUGUgac -5'
24293 3' -55.4 NC_005263.2 + 10864 0.67 0.577792
Target:  5'- ---gGCGUCGCGgcggaaCUCGGCAccGGCGCg- -3'
miRNA:   3'- acagCGCAGCGC------GAGCCGU--UUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.