Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 27826 | 1.12 | 0.001369 |
Target: 5'- gUCACCUUCGCGGCACGCGUUGAAUUCg -3' miRNA: 3'- -AGUGGAAGCGCCGUGCGCAACUUAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 6174 | 0.77 | 0.294429 |
Target: 5'- gCGCCUUgaGCGGCGCGCGUUucGcAUUCa -3' miRNA: 3'- aGUGGAAg-CGCCGUGCGCAA--CuUAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 23931 | 0.71 | 0.588161 |
Target: 5'- gUCGCUUUgGCGGCuuGCGCGUcgUGAGc-- -3' miRNA: 3'- -AGUGGAAgCGCCG--UGCGCA--ACUUaag -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 3291 | 0.7 | 0.63042 |
Target: 5'- aCGCCcuUUCuccuugugcgcgcgGCGGCGCGCgGUUGAAUUa -3' miRNA: 3'- aGUGG--AAG--------------CGCCGUGCG-CAACUUAAg -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 3304 | 0.7 | 0.6453 |
Target: 5'- cUUGCCUgggCGCGGcCGCGCGgu--GUUCa -3' miRNA: 3'- -AGUGGAa--GCGCC-GUGCGCaacuUAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 19171 | 0.7 | 0.668142 |
Target: 5'- cCGCCggCGCGGCucgucggccGCGCGUgGGAUg- -3' miRNA: 3'- aGUGGaaGCGCCG---------UGCGCAaCUUAag -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 43041 | 0.7 | 0.679514 |
Target: 5'- gCACCUgaCGCGGCGCgacaauggcccGCGUUGGcggGUUUg -3' miRNA: 3'- aGUGGAa-GCGCCGUG-----------CGCAACU---UAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 11686 | 0.69 | 0.690837 |
Target: 5'- gCACCUUCGCcuucaucacgaGGCGCuGCGagGGcgUCa -3' miRNA: 3'- aGUGGAAGCG-----------CCGUG-CGCaaCUuaAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 34011 | 0.68 | 0.746281 |
Target: 5'- gCugCgUCGCGGCGCGCGa------- -3' miRNA: 3'- aGugGaAGCGCCGUGCGCaacuuaag -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 20974 | 0.68 | 0.757046 |
Target: 5'- aUCGCCgaCGCGGCugcgcgccuGCGCGUcGAcgUg -3' miRNA: 3'- -AGUGGaaGCGCCG---------UGCGCAaCUuaAg -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 39570 | 0.68 | 0.767673 |
Target: 5'- aCAUCggUUGCGGCGCcGaUGUUGAcgUCg -3' miRNA: 3'- aGUGGa-AGCGCCGUG-C-GCAACUuaAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 5195 | 0.68 | 0.767673 |
Target: 5'- aUCGCCUgcaggCGCGGCGuCGCuaccGUcgcGAAUUCc -3' miRNA: 3'- -AGUGGAa----GCGCCGU-GCG----CAa--CUUAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 44778 | 0.68 | 0.767673 |
Target: 5'- gCGCCg--GCGGCGCGCagacGUUGAAc-- -3' miRNA: 3'- aGUGGaagCGCCGUGCG----CAACUUaag -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 19390 | 0.68 | 0.788461 |
Target: 5'- -aGCCUcggcggCGCGcaguacggcaacGCGCGCGUUGAgguGUUCg -3' miRNA: 3'- agUGGAa-----GCGC------------CGUGCGCAACU---UAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 3710 | 0.68 | 0.788461 |
Target: 5'- aCGCCaaUGCcGCGCGCGUUGAu--- -3' miRNA: 3'- aGUGGaaGCGcCGUGCGCAACUuaag -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 10095 | 0.67 | 0.808545 |
Target: 5'- gCugCUUCaguGCGGCAccaauCGUGgcGAGUUCg -3' miRNA: 3'- aGugGAAG---CGCCGU-----GCGCaaCUUAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 6919 | 0.67 | 0.818292 |
Target: 5'- aCACCUUCGCGucgaacagaccGCACuGCGUgagcgGAAcggccUUCa -3' miRNA: 3'- aGUGGAAGCGC-----------CGUG-CGCAa----CUU-----AAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 36516 | 0.67 | 0.818292 |
Target: 5'- cCACUUcaUCGCGGgGCGCGaccUGAAa-- -3' miRNA: 3'- aGUGGA--AGCGCCgUGCGCa--ACUUaag -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 11384 | 0.67 | 0.827828 |
Target: 5'- cCACUUcUCGCGGCcuGCGCGcacgUG-GUUCg -3' miRNA: 3'- aGUGGA-AGCGCCG--UGCGCa---ACuUAAG- -5' |
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24294 | 3' | -51.4 | NC_005263.2 | + | 24798 | 0.66 | 0.855059 |
Target: 5'- cUCGCCgggCGuCGGCGgCGCGU---AUUCg -3' miRNA: 3'- -AGUGGaa-GC-GCCGU-GCGCAacuUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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