miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24294 3' -51.4 NC_005263.2 + 27826 1.12 0.001369
Target:  5'- gUCACCUUCGCGGCACGCGUUGAAUUCg -3'
miRNA:   3'- -AGUGGAAGCGCCGUGCGCAACUUAAG- -5'
24294 3' -51.4 NC_005263.2 + 6174 0.77 0.294429
Target:  5'- gCGCCUUgaGCGGCGCGCGUUucGcAUUCa -3'
miRNA:   3'- aGUGGAAg-CGCCGUGCGCAA--CuUAAG- -5'
24294 3' -51.4 NC_005263.2 + 23931 0.71 0.588161
Target:  5'- gUCGCUUUgGCGGCuuGCGCGUcgUGAGc-- -3'
miRNA:   3'- -AGUGGAAgCGCCG--UGCGCA--ACUUaag -5'
24294 3' -51.4 NC_005263.2 + 3291 0.7 0.63042
Target:  5'- aCGCCcuUUCuccuugugcgcgcgGCGGCGCGCgGUUGAAUUa -3'
miRNA:   3'- aGUGG--AAG--------------CGCCGUGCG-CAACUUAAg -5'
24294 3' -51.4 NC_005263.2 + 3304 0.7 0.6453
Target:  5'- cUUGCCUgggCGCGGcCGCGCGgu--GUUCa -3'
miRNA:   3'- -AGUGGAa--GCGCC-GUGCGCaacuUAAG- -5'
24294 3' -51.4 NC_005263.2 + 19171 0.7 0.668142
Target:  5'- cCGCCggCGCGGCucgucggccGCGCGUgGGAUg- -3'
miRNA:   3'- aGUGGaaGCGCCG---------UGCGCAaCUUAag -5'
24294 3' -51.4 NC_005263.2 + 43041 0.7 0.679514
Target:  5'- gCACCUgaCGCGGCGCgacaauggcccGCGUUGGcggGUUUg -3'
miRNA:   3'- aGUGGAa-GCGCCGUG-----------CGCAACU---UAAG- -5'
24294 3' -51.4 NC_005263.2 + 11686 0.69 0.690837
Target:  5'- gCACCUUCGCcuucaucacgaGGCGCuGCGagGGcgUCa -3'
miRNA:   3'- aGUGGAAGCG-----------CCGUG-CGCaaCUuaAG- -5'
24294 3' -51.4 NC_005263.2 + 34011 0.68 0.746281
Target:  5'- gCugCgUCGCGGCGCGCGa------- -3'
miRNA:   3'- aGugGaAGCGCCGUGCGCaacuuaag -5'
24294 3' -51.4 NC_005263.2 + 20974 0.68 0.757046
Target:  5'- aUCGCCgaCGCGGCugcgcgccuGCGCGUcGAcgUg -3'
miRNA:   3'- -AGUGGaaGCGCCG---------UGCGCAaCUuaAg -5'
24294 3' -51.4 NC_005263.2 + 39570 0.68 0.767673
Target:  5'- aCAUCggUUGCGGCGCcGaUGUUGAcgUCg -3'
miRNA:   3'- aGUGGa-AGCGCCGUG-C-GCAACUuaAG- -5'
24294 3' -51.4 NC_005263.2 + 5195 0.68 0.767673
Target:  5'- aUCGCCUgcaggCGCGGCGuCGCuaccGUcgcGAAUUCc -3'
miRNA:   3'- -AGUGGAa----GCGCCGU-GCG----CAa--CUUAAG- -5'
24294 3' -51.4 NC_005263.2 + 44778 0.68 0.767673
Target:  5'- gCGCCg--GCGGCGCGCagacGUUGAAc-- -3'
miRNA:   3'- aGUGGaagCGCCGUGCG----CAACUUaag -5'
24294 3' -51.4 NC_005263.2 + 19390 0.68 0.788461
Target:  5'- -aGCCUcggcggCGCGcaguacggcaacGCGCGCGUUGAgguGUUCg -3'
miRNA:   3'- agUGGAa-----GCGC------------CGUGCGCAACU---UAAG- -5'
24294 3' -51.4 NC_005263.2 + 3710 0.68 0.788461
Target:  5'- aCGCCaaUGCcGCGCGCGUUGAu--- -3'
miRNA:   3'- aGUGGaaGCGcCGUGCGCAACUuaag -5'
24294 3' -51.4 NC_005263.2 + 10095 0.67 0.808545
Target:  5'- gCugCUUCaguGCGGCAccaauCGUGgcGAGUUCg -3'
miRNA:   3'- aGugGAAG---CGCCGU-----GCGCaaCUUAAG- -5'
24294 3' -51.4 NC_005263.2 + 6919 0.67 0.818292
Target:  5'- aCACCUUCGCGucgaacagaccGCACuGCGUgagcgGAAcggccUUCa -3'
miRNA:   3'- aGUGGAAGCGC-----------CGUG-CGCAa----CUU-----AAG- -5'
24294 3' -51.4 NC_005263.2 + 36516 0.67 0.818292
Target:  5'- cCACUUcaUCGCGGgGCGCGaccUGAAa-- -3'
miRNA:   3'- aGUGGA--AGCGCCgUGCGCa--ACUUaag -5'
24294 3' -51.4 NC_005263.2 + 11384 0.67 0.827828
Target:  5'- cCACUUcUCGCGGCcuGCGCGcacgUG-GUUCg -3'
miRNA:   3'- aGUGGA-AGCGCCG--UGCGCa---ACuUAAG- -5'
24294 3' -51.4 NC_005263.2 + 24798 0.66 0.855059
Target:  5'- cUCGCCgggCGuCGGCGgCGCGU---AUUCg -3'
miRNA:   3'- -AGUGGaa-GC-GCCGU-GCGCAacuUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.