Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 29487 | 0.66 | 0.69378 |
|
Target: 5'- -cGGGUUgCCAccUGCCG-CGAAcGCCg -3' miRNA: 3'- uaCCCAAgGGUucACGGCcGCUU-UGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 7400 | 0.66 | 0.671618 |
|
Target: 5'- -gGGGUUCUCcAGUGCgaugCGG-GAGAUCg -3' miRNA: 3'- uaCCCAAGGGuUCACG----GCCgCUUUGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 22187 | 0.66 | 0.671618 |
|
Target: 5'- -cGGGcgaaCC-GGUGCUGGCGugGCCc -3' miRNA: 3'- uaCCCaag-GGuUCACGGCCGCuuUGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 5374 | 0.66 | 0.660473 |
|
Target: 5'- -cGGGUcgaUCGGGUugaaGCCGGCGuuGACCu -3' miRNA: 3'- uaCCCAag-GGUUCA----CGGCCGCu-UUGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 12529 | 0.66 | 0.649301 |
|
Target: 5'- uUGGcGUUCgCAuucacguucgcGGcgGCCGGCGgcGCCg -3' miRNA: 3'- uACC-CAAGgGU-----------UCa-CGGCCGCuuUGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 29709 | 0.67 | 0.581179 |
|
Target: 5'- cGUGcGcaCCCGcGUGCCGGCGAAgaacuucGCCu -3' miRNA: 3'- -UACcCaaGGGUuCACGGCCGCUU-------UGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 32780 | 0.69 | 0.485126 |
|
Target: 5'- -gGGGUUCUC-GGUGUCGGCccgcGCCu -3' miRNA: 3'- uaCCCAAGGGuUCACGGCCGcuu-UGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 37899 | 0.74 | 0.266716 |
|
Target: 5'- cUGGacucgagCCCGAG-GCCGGCGAGGCUu -3' miRNA: 3'- uACCcaa----GGGUUCaCGGCCGCUUUGG- -5' |
|||||||
| 24294 | 5' | -55.1 | NC_005263.2 | + | 27862 | 1.11 | 0.000606 |
|
Target: 5'- gAUGGGUUCCCAAGUGCCGGCGAAACCg -3' miRNA: 3'- -UACCCAAGGGUUCACGGCCGCUUUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home