miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24295 3' -55 NC_005263.2 + 36096 0.65 0.713975
Target:  5'- uGAGCGcGCcgucGCGuuGAUGGCcgcgucguacuUGCGCUCGa -3'
miRNA:   3'- gCUCGC-CG----UGC--UUACCGu----------ACGUGAGC- -5'
24295 3' -55 NC_005263.2 + 21780 0.65 0.713975
Target:  5'- aCGAGUGGCGCGAAUcacucGCGCaUCGc -3'
miRNA:   3'- -GCUCGCCGUGCUUAccguaCGUG-AGC- -5'
24295 3' -55 NC_005263.2 + 47372 0.65 0.713975
Target:  5'- uGGGCGGCGCGuucGAUGcGCGcgaGCACa-- -3'
miRNA:   3'- gCUCGCCGUGC---UUAC-CGUa--CGUGagc -5'
24295 3' -55 NC_005263.2 + 18750 0.65 0.713975
Target:  5'- aGAuCGGCGCGAucguaGGCGgcgcgGUGCUCGc -3'
miRNA:   3'- gCUcGCCGUGCUua---CCGUa----CGUGAGC- -5'
24295 3' -55 NC_005263.2 + 9186 0.66 0.703081
Target:  5'- gCGaAGCGaCGCGggUGcGCAaacgggcgGCGCUCGu -3'
miRNA:   3'- -GC-UCGCcGUGCuuAC-CGUa-------CGUGAGC- -5'
24295 3' -55 NC_005263.2 + 1387 0.66 0.68109
Target:  5'- aCGAGC-GCAUGAAgccGCGcuUGUACUCGu -3'
miRNA:   3'- -GCUCGcCGUGCUUac-CGU--ACGUGAGC- -5'
24295 3' -55 NC_005263.2 + 29057 0.66 0.68109
Target:  5'- cCGcGCGGCGCGuccucggGGCGgcGCGCaUCGg -3'
miRNA:   3'- -GCuCGCCGUGCuua----CCGUa-CGUG-AGC- -5'
24295 3' -55 NC_005263.2 + 15488 0.66 0.670017
Target:  5'- -cGGCGGCGCG-GUGaGCAUcaGCAC-CGg -3'
miRNA:   3'- gcUCGCCGUGCuUAC-CGUA--CGUGaGC- -5'
24295 3' -55 NC_005263.2 + 22113 0.66 0.658908
Target:  5'- aGuGCcGCGCGAGUGGCAgcugaaaGCGUUCGa -3'
miRNA:   3'- gCuCGcCGUGCUUACCGUa------CGUGAGC- -5'
24295 3' -55 NC_005263.2 + 42317 0.66 0.658908
Target:  5'- uCGAGaCGGCGCaGcgGcGCGUGCGCg-- -3'
miRNA:   3'- -GCUC-GCCGUGcUuaC-CGUACGUGagc -5'
24295 3' -55 NC_005263.2 + 31020 0.66 0.658908
Target:  5'- aGuGCGGCgagGCGc--GGCGUGCgcuGCUCGa -3'
miRNA:   3'- gCuCGCCG---UGCuuaCCGUACG---UGAGC- -5'
24295 3' -55 NC_005263.2 + 35986 0.66 0.658908
Target:  5'- gGAGC-GCGCGuAAUGGCGcGCGCg-- -3'
miRNA:   3'- gCUCGcCGUGC-UUACCGUaCGUGagc -5'
24295 3' -55 NC_005263.2 + 36140 0.66 0.658908
Target:  5'- uCGAGCGcaaGUACG---GGCGcGCGCUCGa -3'
miRNA:   3'- -GCUCGC---CGUGCuuaCCGUaCGUGAGC- -5'
24295 3' -55 NC_005263.2 + 13363 0.67 0.647773
Target:  5'- gCGGGCGGCGCGAAacacGCGccGCaauuGCUCGc -3'
miRNA:   3'- -GCUCGCCGUGCUUac--CGUa-CG----UGAGC- -5'
24295 3' -55 NC_005263.2 + 17722 0.67 0.647773
Target:  5'- aCGAGCGccgccGCAUGg--GGCucGCACUCGg -3'
miRNA:   3'- -GCUCGC-----CGUGCuuaCCGuaCGUGAGC- -5'
24295 3' -55 NC_005263.2 + 41381 0.67 0.647773
Target:  5'- gCGAGUGuGUACGuGUGGCGcucgagcaUGCGCcCGa -3'
miRNA:   3'- -GCUCGC-CGUGCuUACCGU--------ACGUGaGC- -5'
24295 3' -55 NC_005263.2 + 15190 0.67 0.647773
Target:  5'- gCGAGCGcgccGCGCGAcgucGGCAaGCGCUUc -3'
miRNA:   3'- -GCUCGC----CGUGCUua--CCGUaCGUGAGc -5'
24295 3' -55 NC_005263.2 + 3918 0.67 0.647773
Target:  5'- cCGGGCGGCAauggcggcaggcCGAccGGCAgguugGCGC-CGu -3'
miRNA:   3'- -GCUCGCCGU------------GCUuaCCGUa----CGUGaGC- -5'
24295 3' -55 NC_005263.2 + 12072 0.67 0.641084
Target:  5'- cCGAGacgGGCGCGAguaccuugucgucgcGgccUGGCAUGCGCagCGg -3'
miRNA:   3'- -GCUCg--CCGUGCU---------------U---ACCGUACGUGa-GC- -5'
24295 3' -55 NC_005263.2 + 47583 0.67 0.625469
Target:  5'- gCGGGCGGCGCuuugcauuGGAgacGGuCAUGUACaUCGg -3'
miRNA:   3'- -GCUCGCCGUG--------CUUa--CC-GUACGUG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.