miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 44388 0.69 0.463772
Target:  5'- uGGACAUgcguaUCAACGCGCGCGgcaUUGgCGUc -3'
miRNA:   3'- -CUUGUGg----AGUUGCGCGCGC---AACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 1614 0.69 0.453698
Target:  5'- cGGACACUUCGACGCcgaGUGCGUcgGUCa- -3'
miRNA:   3'- -CUUGUGGAGUUGCG---CGCGCAa-CGGca -5'
24296 3' -55.4 NC_005263.2 + 27118 0.69 0.463772
Target:  5'- cGGCACgUCGACGCGCaggcGCGcaGCCGc -3'
miRNA:   3'- cUUGUGgAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 16475 0.7 0.424212
Target:  5'- cGAACACCgagaCGGCGCuGCGCcgcgcgGCCGUc -3'
miRNA:   3'- -CUUGUGGa---GUUGCG-CGCGcaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 19401 0.7 0.411795
Target:  5'- -cGCGCaguacggCAACGCGCGCGUugagguguucggcgUGCCGc -3'
miRNA:   3'- cuUGUGga-----GUUGCGCGCGCA--------------ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 35623 0.7 0.433914
Target:  5'- aGGAUGCCgCAAUGCGCGCc--GCCGg -3'
miRNA:   3'- -CUUGUGGaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 23796 0.7 0.395902
Target:  5'- cGAcCGCCgaugCGACGCGCGCGa-GCCa- -3'
miRNA:   3'- -CUuGUGGa---GUUGCGCGCGCaaCGGca -5'
24296 3' -55.4 NC_005263.2 + 38542 0.7 0.399606
Target:  5'- cAGCGCCuggacacguucuuugUCGACcuguGCGaCGCGUUGCCGUc -3'
miRNA:   3'- cUUGUGG---------------AGUUG----CGC-GCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 33831 0.7 0.443744
Target:  5'- -cGCuuauCC-CAAUGCGCGCGUUgcGCCGg -3'
miRNA:   3'- cuUGu---GGaGUUGCGCGCGCAA--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 42465 0.71 0.377718
Target:  5'- aGAAaACCgguaacggCAugGUGCGCGUUGCCu- -3'
miRNA:   3'- -CUUgUGGa-------GUugCGCGCGCAACGGca -5'
24296 3' -55.4 NC_005263.2 + 16342 0.71 0.36884
Target:  5'- aAACGCUUCGACGagacgaaGCGCGcgGCCGc -3'
miRNA:   3'- cUUGUGGAGUUGCg------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 29201 0.71 0.38674
Target:  5'- --uCACgCUCGACGCaggccgGCGCGUauuUGCCGUc -3'
miRNA:   3'- cuuGUG-GAGUUGCG------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 44749 0.71 0.38674
Target:  5'- -cGCACugucuggucgCUCGAcCGCGCGCGgcGCCGg -3'
miRNA:   3'- cuUGUG----------GAGUU-GCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 45796 0.72 0.334777
Target:  5'- --cCGCCaguUCAACGCGgGCG-UGCCGg -3'
miRNA:   3'- cuuGUGG---AGUUGCGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 25417 0.72 0.334777
Target:  5'- aGACAgccauCCUCGGCGCGUGCGgUGCgGg -3'
miRNA:   3'- cUUGU-----GGAGUUGCGCGCGCaACGgCa -5'
24296 3' -55.4 NC_005263.2 + 33425 0.72 0.310777
Target:  5'- uGAGCGCC---GCGCGCGCGUaGCgGUc -3'
miRNA:   3'- -CUUGUGGaguUGCGCGCGCAaCGgCA- -5'
24296 3' -55.4 NC_005263.2 + 22325 0.72 0.343073
Target:  5'- cGGCACgCUCAGCGCGCGgGcUGCUu- -3'
miRNA:   3'- cUUGUG-GAGUUGCGCGCgCaACGGca -5'
24296 3' -55.4 NC_005263.2 + 37440 0.72 0.343073
Target:  5'- -cAUACgUCGGCGCGCGCGgucUGCgCGg -3'
miRNA:   3'- cuUGUGgAGUUGCGCGCGCa--ACG-GCa -5'
24296 3' -55.4 NC_005263.2 + 15550 0.72 0.303073
Target:  5'- ---aACCUCGGCGaguaaGCGCGUgGCCGg -3'
miRNA:   3'- cuugUGGAGUUGCg----CGCGCAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 9796 0.73 0.288108
Target:  5'- gGGGCGCCUCGcCGCGUGCGgcauaGCCu- -3'
miRNA:   3'- -CUUGUGGAGUuGCGCGCGCaa---CGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.