Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24296 | 3' | -55.4 | NC_005263.2 | + | 9796 | 0.73 | 0.288108 |
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Target: 5'- gGGGCGCCUCGcCGCGUGCGgcauaGCCu- -3' miRNA: 3'- -CUUGUGGAGUuGCGCGCGCaa---CGGca -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 31240 | 0.74 | 0.25325 |
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Target: 5'- gGGGCGCUUCGguuccGCGCgGCGCGgcGCCGg -3' miRNA: 3'- -CUUGUGGAGU-----UGCG-CGCGCaaCGGCa -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 37222 | 0.74 | 0.259933 |
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Target: 5'- -uACGCCgcucaCGACGCGCGCcggUGCCGa -3' miRNA: 3'- cuUGUGGa----GUUGCGCGCGca-ACGGCa -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 27635 | 0.74 | 0.25325 |
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Target: 5'- --uUACCUCGACG-G-GCGUUGCCGUa -3' miRNA: 3'- cuuGUGGAGUUGCgCgCGCAACGGCA- -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 41477 | 0.75 | 0.199311 |
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Target: 5'- -cGCugCUCGACGCGgGCGagucgGCCGUc -3' miRNA: 3'- cuUGugGAGUUGCGCgCGCaa---CGGCA- -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 44655 | 0.76 | 0.18877 |
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Target: 5'- -uGCGCCUCGAUGCGuCGCGcgcGCCGa -3' miRNA: 3'- cuUGUGGAGUUGCGC-GCGCaa-CGGCa -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 3722 | 0.77 | 0.15138 |
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Target: 5'- uGAGCGCCUCGcgcACGCcgggccggaucaGCGCGUacgUGCCGUa -3' miRNA: 3'- -CUUGUGGAGU---UGCG------------CGCGCA---ACGGCA- -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 670 | 0.81 | 0.08079 |
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Target: 5'- cGAACGCCUCAucguaGCGCGCcUUGCCGa -3' miRNA: 3'- -CUUGUGGAGUug---CGCGCGcAACGGCa -5' |
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| 24296 | 3' | -55.4 | NC_005263.2 | + | 28696 | 1.08 | 0.000919 |
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Target: 5'- cGAACACCUCAACGCGCGCGUUGCCGUa -3' miRNA: 3'- -CUUGUGGAGUUGCGCGCGCAACGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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