miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 18861 0.68 0.547002
Target:  5'- uGAACaacgcguGCCUCGGCGCGCcgcuGCGc-GCCGa -3'
miRNA:   3'- -CUUG-------UGGAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 8989 0.68 0.547002
Target:  5'- cGAGCGCCgacgcaCGGCGCacgagucGCGCGUacucGCCGUc -3'
miRNA:   3'- -CUUGUGGa-----GUUGCG-------CGCGCAa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 12510 0.68 0.54809
Target:  5'- -cGCGCCggCuuCGCGCGgGUUGgCGUu -3'
miRNA:   3'- cuUGUGGa-GuuGCGCGCgCAACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 21296 0.68 0.557912
Target:  5'- uGGGCGCCaacuacgCGACGUGCGgGUUcacgaacGCCGUc -3'
miRNA:   3'- -CUUGUGGa------GUUGCGCGCgCAA-------CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 4462 0.68 0.559006
Target:  5'- cGAGCACUUCuucguccguGCGCGCGgGUcGgCGUg -3'
miRNA:   3'- -CUUGUGGAGu--------UGCGCGCgCAaCgGCA- -5'
24296 3' -55.4 NC_005263.2 + 44123 0.68 0.559006
Target:  5'- -cGCugCUCGGCgGCGCGCGc--CCGUu -3'
miRNA:   3'- cuUGugGAGUUG-CGCGCGCaacGGCA- -5'
24296 3' -55.4 NC_005263.2 + 13283 0.68 0.559006
Target:  5'- cGACACCgacUGGCGCGUGCGcaGCCa- -3'
miRNA:   3'- cUUGUGGa--GUUGCGCGCGCaaCGGca -5'
24296 3' -55.4 NC_005263.2 + 37016 0.67 0.568882
Target:  5'- cAGCugCUU-ACGCGCGgCGUcaucccacgcuuuUGCCGUg -3'
miRNA:   3'- cUUGugGAGuUGCGCGC-GCA-------------ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 28982 0.67 0.569982
Target:  5'- aAGCGCCcggCGAUGCGCucgGCGcgGCCGa -3'
miRNA:   3'- cUUGUGGa--GUUGCGCG---CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 27105 0.67 0.579906
Target:  5'- uGGCGCUUCGACGgGCGCGgcGaauugcaccgaacCCGUa -3'
miRNA:   3'- cUUGUGGAGUUGCgCGCGCaaC-------------GGCA- -5'
24296 3' -55.4 NC_005263.2 + 29504 0.67 0.590974
Target:  5'- cGAACGCCgcugcggcguccgUCGGCGCGCcaGCaGUgGCCGg -3'
miRNA:   3'- -CUUGUGG-------------AGUUGCGCG--CG-CAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 41536 0.67 0.592082
Target:  5'- -uGCGCCUgcgcaAACGCGCGgCGc-GCCGUg -3'
miRNA:   3'- cuUGUGGAg----UUGCGCGC-GCaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 10107 0.67 0.592082
Target:  5'- cGGCACCaaUCGugGCGaguuCGUUGCCGc -3'
miRNA:   3'- cUUGUGG--AGUugCGCgc--GCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 19622 0.67 0.602077
Target:  5'- cGAACGCCUCGuACGCGUugauggcugaaguGaUGUcGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU-UGCGCG-------------C-GCAaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 9071 0.67 0.603189
Target:  5'- uAGCGCCUCGACGUGCcaguuCGggucgaucgGCCGg -3'
miRNA:   3'- cUUGUGGAGUUGCGCGc----GCaa-------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 41484 0.67 0.603189
Target:  5'- cGACugCUCGaccGCGCcgaGCGCGccGCCGa -3'
miRNA:   3'- cUUGugGAGU---UGCG---CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 17485 0.67 0.603189
Target:  5'- uGAACGCCcUGAuCGCGCGCGgcgcGUCGa -3'
miRNA:   3'- -CUUGUGGaGUU-GCGCGCGCaa--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 43499 0.67 0.614321
Target:  5'- cGGCACCUCGAagcUGCcgGCGCG--GCCGUu -3'
miRNA:   3'- cUUGUGGAGUU---GCG--CGCGCaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 30696 0.67 0.614321
Target:  5'- -uGCACCUgCGACaccgcccgccagGCGCGCGgccgcGCCGg -3'
miRNA:   3'- cuUGUGGA-GUUG------------CGCGCGCaa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 26499 0.67 0.614321
Target:  5'- -uGCGCCUUGAuguaacuguUGCGCGCGgcGUCGa -3'
miRNA:   3'- cuUGUGGAGUU---------GCGCGCGCaaCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.