Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 22017 | 0.66 | 0.68109 |
Target: 5'- cGAGCAgCUCGACGCGCucuauGCGcacgUGCg-- -3' miRNA: 3'- -CUUGUgGAGUUGCGCG-----CGCa---ACGgca -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 22325 | 0.72 | 0.343073 |
Target: 5'- cGGCACgCUCAGCGCGCGgGcUGCUu- -3' miRNA: 3'- cUUGUG-GAGUUGCGCGCgCaACGGca -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 23016 | 0.69 | 0.473961 |
Target: 5'- aGGACACC-CGGCGUGCcaGCGccacccgaaUUGCCGg -3' miRNA: 3'- -CUUGUGGaGUUGCGCG--CGC---------AACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 23796 | 0.7 | 0.395902 |
Target: 5'- cGAcCGCCgaugCGACGCGCGCGa-GCCa- -3' miRNA: 3'- -CUuGUGGa---GUUGCGCGCGCaaCGGca -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 24686 | 0.68 | 0.526469 |
Target: 5'- gGGGCGCCgguaacggCGGCGCGC-CGaacgUGCCGg -3' miRNA: 3'- -CUUGUGGa-------GUUGCGCGcGCa---ACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 25417 | 0.72 | 0.334777 |
Target: 5'- aGACAgccauCCUCGGCGCGUGCGgUGCgGg -3' miRNA: 3'- cUUGU-----GGAGUUGCGCGCGCaACGgCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 25716 | 0.68 | 0.537242 |
Target: 5'- uGGGCGCCUCuuuccuGGCGCuGCGCGccgUGCaCGa -3' miRNA: 3'- -CUUGUGGAG------UUGCG-CGCGCa--ACG-GCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 25892 | 0.66 | 0.633277 |
Target: 5'- cGACGCCggCGAcggcCGCGacguacguaacgguCGCGUUGCCGg -3' miRNA: 3'- cUUGUGGa-GUU----GCGC--------------GCGCAACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 26499 | 0.67 | 0.614321 |
Target: 5'- -uGCGCCUUGAuguaacuguUGCGCGCGgcGUCGa -3' miRNA: 3'- cuUGUGGAGUU---------GCGCGCGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 27105 | 0.67 | 0.579906 |
Target: 5'- uGGCGCUUCGACGgGCGCGgcGaauugcaccgaacCCGUa -3' miRNA: 3'- cUUGUGGAGUUGCgCGCGCaaC-------------GGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 27118 | 0.69 | 0.463772 |
Target: 5'- cGGCACgUCGACGCGCaggcGCGcaGCCGc -3' miRNA: 3'- cUUGUGgAGUUGCGCG----CGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 27635 | 0.74 | 0.25325 |
Target: 5'- --uUACCUCGACG-G-GCGUUGCCGUa -3' miRNA: 3'- cuuGUGGAGUUGCgCgCGCAACGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 28696 | 1.08 | 0.000919 |
Target: 5'- cGAACACCUCAACGCGCGCGUUGCCGUa -3' miRNA: 3'- -CUUGUGGAGUUGCGCGCGCAACGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 28982 | 0.67 | 0.569982 |
Target: 5'- aAGCGCCcggCGAUGCGCucgGCGcgGCCGa -3' miRNA: 3'- cUUGUGGa--GUUGCGCG---CGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 29036 | 0.69 | 0.484262 |
Target: 5'- aGACGCaC-CAGCGCGCGCag-GCCGc -3' miRNA: 3'- cUUGUG-GaGUUGCGCGCGcaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 29065 | 0.66 | 0.670017 |
Target: 5'- -cGCGuCCUCGGgGCgGCGCGcaucgGCCGUc -3' miRNA: 3'- cuUGU-GGAGUUgCG-CGCGCaa---CGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 29201 | 0.71 | 0.38674 |
Target: 5'- --uCACgCUCGACGCaggccgGCGCGUauuUGCCGUc -3' miRNA: 3'- cuuGUG-GAGUUGCG------CGCGCA---ACGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 29504 | 0.67 | 0.590974 |
Target: 5'- cGAACGCCgcugcggcguccgUCGGCGCGCcaGCaGUgGCCGg -3' miRNA: 3'- -CUUGUGG-------------AGUUGCGCG--CG-CAaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 30322 | 0.69 | 0.472937 |
Target: 5'- -uGCGCCUCGaaaauuuGCGagaaGCGCG-UGCCGa -3' miRNA: 3'- cuUGUGGAGU-------UGCg---CGCGCaACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 30696 | 0.67 | 0.614321 |
Target: 5'- -uGCACCUgCGACaccgcccgccagGCGCGCGgccgcGCCGg -3' miRNA: 3'- cuUGUGGA-GUUG------------CGCGCGCaa---CGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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