miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 35986 0.66 0.647773
Target:  5'- gGAGCGCgCguaAugGCGCGCGc-GCCGc -3'
miRNA:   3'- -CUUGUG-Gag-UugCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 35914 0.66 0.670017
Target:  5'- aGACACaggcgacCAugGCGaCGCGcgUGCCGUu -3'
miRNA:   3'- cUUGUGga-----GUugCGC-GCGCa-ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 35623 0.7 0.433914
Target:  5'- aGGAUGCCgCAAUGCGCGCc--GCCGg -3'
miRNA:   3'- -CUUGUGGaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 34916 0.66 0.670017
Target:  5'- cGAAUgucgACCUgUGAUGCGCGCGgaGCUGa -3'
miRNA:   3'- -CUUG----UGGA-GUUGCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 34050 0.66 0.625469
Target:  5'- cGGCGCgCUCAAUGCGCucgacGCGgcGcCCGUg -3'
miRNA:   3'- cUUGUG-GAGUUGCGCG-----CGCaaC-GGCA- -5'
24296 3' -55.4 NC_005263.2 + 33831 0.7 0.443744
Target:  5'- -cGCuuauCC-CAAUGCGCGCGUUgcGCCGg -3'
miRNA:   3'- cuUGu---GGaGUUGCGCGCGCAA--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 33425 0.72 0.310777
Target:  5'- uGAGCGCC---GCGCGCGCGUaGCgGUc -3'
miRNA:   3'- -CUUGUGGaguUGCGCGCGCAaCGgCA- -5'
24296 3' -55.4 NC_005263.2 + 32534 0.73 0.298521
Target:  5'- -cGCGCUaccgucauucggcguUCAGCGCGCGCGUcugcGCCGa -3'
miRNA:   3'- cuUGUGG---------------AGUUGCGCGCGCAa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 31240 0.74 0.25325
Target:  5'- gGGGCGCUUCGguuccGCGCgGCGCGgcGCCGg -3'
miRNA:   3'- -CUUGUGGAGU-----UGCG-CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 30696 0.67 0.614321
Target:  5'- -uGCACCUgCGACaccgcccgccagGCGCGCGgccgcGCCGg -3'
miRNA:   3'- cuUGUGGA-GUUG------------CGCGCGCaa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 30322 0.69 0.472937
Target:  5'- -uGCGCCUCGaaaauuuGCGagaaGCGCG-UGCCGa -3'
miRNA:   3'- cuUGUGGAGU-------UGCg---CGCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 29504 0.67 0.590974
Target:  5'- cGAACGCCgcugcggcguccgUCGGCGCGCcaGCaGUgGCCGg -3'
miRNA:   3'- -CUUGUGG-------------AGUUGCGCG--CG-CAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 29201 0.71 0.38674
Target:  5'- --uCACgCUCGACGCaggccgGCGCGUauuUGCCGUc -3'
miRNA:   3'- cuuGUG-GAGUUGCG------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 29065 0.66 0.670017
Target:  5'- -cGCGuCCUCGGgGCgGCGCGcaucgGCCGUc -3'
miRNA:   3'- cuUGU-GGAGUUgCG-CGCGCaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 29036 0.69 0.484262
Target:  5'- aGACGCaC-CAGCGCGCGCag-GCCGc -3'
miRNA:   3'- cUUGUG-GaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 28982 0.67 0.569982
Target:  5'- aAGCGCCcggCGAUGCGCucgGCGcgGCCGa -3'
miRNA:   3'- cUUGUGGa--GUUGCGCG---CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 28696 1.08 0.000919
Target:  5'- cGAACACCUCAACGCGCGCGUUGCCGUa -3'
miRNA:   3'- -CUUGUGGAGUUGCGCGCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 27635 0.74 0.25325
Target:  5'- --uUACCUCGACG-G-GCGUUGCCGUa -3'
miRNA:   3'- cuuGUGGAGUUGCgCgCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 27118 0.69 0.463772
Target:  5'- cGGCACgUCGACGCGCaggcGCGcaGCCGc -3'
miRNA:   3'- cUUGUGgAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 27105 0.67 0.579906
Target:  5'- uGGCGCUUCGACGgGCGCGgcGaauugcaccgaacCCGUa -3'
miRNA:   3'- cUUGUGGAGUUGCgCGCGCaaC-------------GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.