miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 26499 0.67 0.614321
Target:  5'- -uGCGCCUUGAuguaacuguUGCGCGCGgcGUCGa -3'
miRNA:   3'- cuUGUGGAGUU---------GCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 25892 0.66 0.633277
Target:  5'- cGACGCCggCGAcggcCGCGacguacguaacgguCGCGUUGCCGg -3'
miRNA:   3'- cUUGUGGa-GUU----GCGC--------------GCGCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 25716 0.68 0.537242
Target:  5'- uGGGCGCCUCuuuccuGGCGCuGCGCGccgUGCaCGa -3'
miRNA:   3'- -CUUGUGGAG------UUGCG-CGCGCa--ACG-GCa -5'
24296 3' -55.4 NC_005263.2 + 25417 0.72 0.334777
Target:  5'- aGACAgccauCCUCGGCGCGUGCGgUGCgGg -3'
miRNA:   3'- cUUGU-----GGAGUUGCGCGCGCaACGgCa -5'
24296 3' -55.4 NC_005263.2 + 24686 0.68 0.526469
Target:  5'- gGGGCGCCgguaacggCGGCGCGC-CGaacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-------GUUGCGCGcGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 23796 0.7 0.395902
Target:  5'- cGAcCGCCgaugCGACGCGCGCGa-GCCa- -3'
miRNA:   3'- -CUuGUGGa---GUUGCGCGCGCaaCGGca -5'
24296 3' -55.4 NC_005263.2 + 23016 0.69 0.473961
Target:  5'- aGGACACC-CGGCGUGCcaGCGccacccgaaUUGCCGg -3'
miRNA:   3'- -CUUGUGGaGUUGCGCG--CGC---------AACGGCa -5'
24296 3' -55.4 NC_005263.2 + 22325 0.72 0.343073
Target:  5'- cGGCACgCUCAGCGCGCGgGcUGCUu- -3'
miRNA:   3'- cUUGUG-GAGUUGCGCGCgCaACGGca -5'
24296 3' -55.4 NC_005263.2 + 22017 0.66 0.68109
Target:  5'- cGAGCAgCUCGACGCGCucuauGCGcacgUGCg-- -3'
miRNA:   3'- -CUUGUgGAGUUGCGCG-----CGCa---ACGgca -5'
24296 3' -55.4 NC_005263.2 + 21558 0.66 0.68109
Target:  5'- aGAGCACUggccguucCAGCGC-CGCGUgcucGCCGc -3'
miRNA:   3'- -CUUGUGGa-------GUUGCGcGCGCAa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 21296 0.68 0.557912
Target:  5'- uGGGCGCCaacuacgCGACGUGCGgGUUcacgaacGCCGUc -3'
miRNA:   3'- -CUUGUGGa------GUUGCGCGCgCAA-------CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 21185 0.67 0.614321
Target:  5'- cGGACGCg--GACGCGCGCGgcGCgGg -3'
miRNA:   3'- -CUUGUGgagUUGCGCGCGCaaCGgCa -5'
24296 3' -55.4 NC_005263.2 + 20969 0.66 0.625469
Target:  5'- cGGACAUCgcCGACGCggcugcgcgccuGCGCGUcgacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-GUUGCG------------CGCGCA-----ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 20352 0.66 0.670017
Target:  5'- -cGCACCUCgGGgGCGCGCaugGCUGa -3'
miRNA:   3'- cuUGUGGAG-UUgCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 19622 0.67 0.602077
Target:  5'- cGAACGCCUCGuACGCGUugauggcugaaguGaUGUcGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU-UGCGCG-------------C-GCAaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 19401 0.7 0.411795
Target:  5'- -cGCGCaguacggCAACGCGCGCGUugagguguucggcgUGCCGc -3'
miRNA:   3'- cuUGUGga-----GUUGCGCGCGCA--------------ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 18861 0.68 0.547002
Target:  5'- uGAACaacgcguGCCUCGGCGCGCcgcuGCGc-GCCGa -3'
miRNA:   3'- -CUUG-------UGGAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 18440 0.66 0.625469
Target:  5'- uGAAC-CgCUCGAgGUGCGCGUgaagcaGCCGc -3'
miRNA:   3'- -CUUGuG-GAGUUgCGCGCGCAa-----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 17485 0.67 0.603189
Target:  5'- uGAACGCCcUGAuCGCGCGCGgcgcGUCGa -3'
miRNA:   3'- -CUUGUGGaGUU-GCGCGCGCaa--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 16988 0.66 0.68109
Target:  5'- cGAAUACCUgAGCGaCGCGacc-GCCGa -3'
miRNA:   3'- -CUUGUGGAgUUGC-GCGCgcaaCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.