miRNA display CGI


Results 61 - 80 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 16572 0.66 0.658908
Target:  5'- cGACGCCaaggcCGGCgGCGaCGCGUUcGCCGg -3'
miRNA:   3'- cUUGUGGa----GUUG-CGC-GCGCAA-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 16475 0.7 0.424212
Target:  5'- cGAACACCgagaCGGCGCuGCGCcgcgcgGCCGUc -3'
miRNA:   3'- -CUUGUGGa---GUUGCG-CGCGcaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 16342 0.71 0.36884
Target:  5'- aAACGCUUCGACGagacgaaGCGCGcgGCCGc -3'
miRNA:   3'- cUUGUGGAGUUGCg------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 15780 0.66 0.625469
Target:  5'- cAGCugCUCGACGaccacuGCGCGcUGCuCGUc -3'
miRNA:   3'- cUUGugGAGUUGCg-----CGCGCaACG-GCA- -5'
24296 3' -55.4 NC_005263.2 + 15556 0.66 0.636623
Target:  5'- cGGCGCa--GACGCGCGCGcugaacGCCGa -3'
miRNA:   3'- cUUGUGgagUUGCGCGCGCaa----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 15550 0.72 0.303073
Target:  5'- ---aACCUCGGCGaguaaGCGCGUgGCCGg -3'
miRNA:   3'- cuugUGGAGUUGCg----CGCGCAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 13283 0.68 0.559006
Target:  5'- cGACACCgacUGGCGCGUGCGcaGCCa- -3'
miRNA:   3'- cUUGUGGa--GUUGCGCGCGCaaCGGca -5'
24296 3' -55.4 NC_005263.2 + 12561 0.66 0.68109
Target:  5'- cGGCGCCgUAGCGCccgcccGCGCGccGCCGg -3'
miRNA:   3'- cUUGUGGaGUUGCG------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 12510 0.68 0.54809
Target:  5'- -cGCGCCggCuuCGCGCGgGUUGgCGUu -3'
miRNA:   3'- cuUGUGGa-GuuGCGCGCgCAACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 11959 0.67 0.614321
Target:  5'- --uCGCCUCGA-GCGCGC---GCCGUa -3'
miRNA:   3'- cuuGUGGAGUUgCGCGCGcaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 10658 0.66 0.647773
Target:  5'- uGGACGCCgcgCAGacCGCGCGC---GCCGa -3'
miRNA:   3'- -CUUGUGGa--GUU--GCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 10295 0.66 0.658908
Target:  5'- uGAGCGCCg-GAUGCGCGCcc-GUCGUc -3'
miRNA:   3'- -CUUGUGGagUUGCGCGCGcaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 10136 0.66 0.636623
Target:  5'- --cCACCuUCAGCGCcagccgGCGCGgcaucgGCCGg -3'
miRNA:   3'- cuuGUGG-AGUUGCG------CGCGCaa----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 10107 0.67 0.592082
Target:  5'- cGGCACCaaUCGugGCGaguuCGUUGCCGc -3'
miRNA:   3'- cUUGUGG--AGUugCGCgc--GCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 9796 0.73 0.288108
Target:  5'- gGGGCGCCUCGcCGCGUGCGgcauaGCCu- -3'
miRNA:   3'- -CUUGUGGAGUuGCGCGCGCaa---CGGca -5'
24296 3' -55.4 NC_005263.2 + 9700 0.66 0.68109
Target:  5'- -cGCACC-CGACGCGCGacaGUgcGUCGa -3'
miRNA:   3'- cuUGUGGaGUUGCGCGCg--CAa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 9071 0.67 0.603189
Target:  5'- uAGCGCCUCGACGUGCcaguuCGggucgaucgGCCGg -3'
miRNA:   3'- cUUGUGGAGUUGCGCGc----GCaa-------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 8989 0.68 0.547002
Target:  5'- cGAGCGCCgacgcaCGGCGCacgagucGCGCGUacucGCCGUc -3'
miRNA:   3'- -CUUGUGGa-----GUUGCG-------CGCGCAa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 6173 0.69 0.472937
Target:  5'- -uGCGCCUUgAGCgGCGCGCGUUucgcauucaggaaGCCGg -3'
miRNA:   3'- cuUGUGGAG-UUG-CGCGCGCAA-------------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 5251 0.68 0.526469
Target:  5'- aGGCGCCgUCAucaGCGgGCGgUGCCGg -3'
miRNA:   3'- cUUGUGG-AGUug-CGCgCGCaACGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.