miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 29036 0.69 0.484262
Target:  5'- aGACGCaC-CAGCGCGCGCag-GCCGc -3'
miRNA:   3'- cUUGUG-GaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 4848 0.68 0.526469
Target:  5'- ---uGCC-CGuACGCGCGCGccgUGCCGa -3'
miRNA:   3'- cuugUGGaGU-UGCGCGCGCa--ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 25892 0.66 0.633277
Target:  5'- cGACGCCggCGAcggcCGCGacguacguaacgguCGCGUUGCCGg -3'
miRNA:   3'- cUUGUGGa-GUU----GCGC--------------GCGCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 15780 0.66 0.625469
Target:  5'- cAGCugCUCGACGaccacuGCGCGcUGCuCGUc -3'
miRNA:   3'- cUUGugGAGUUGCg-----CGCGCaACG-GCA- -5'
24296 3' -55.4 NC_005263.2 + 22017 0.66 0.68109
Target:  5'- cGAGCAgCUCGACGCGCucuauGCGcacgUGCg-- -3'
miRNA:   3'- -CUUGUgGAGUUGCGCG-----CGCa---ACGgca -5'
24296 3' -55.4 NC_005263.2 + 35914 0.66 0.670017
Target:  5'- aGACACaggcgacCAugGCGaCGCGcgUGCCGUu -3'
miRNA:   3'- cUUGUGga-----GUugCGC-GCGCa-ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 34916 0.66 0.670017
Target:  5'- cGAAUgucgACCUgUGAUGCGCGCGgaGCUGa -3'
miRNA:   3'- -CUUG----UGGA-GUUGCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 1614 0.69 0.453698
Target:  5'- cGGACACUUCGACGCcgaGUGCGUcgGUCa- -3'
miRNA:   3'- -CUUGUGGAGUUGCG---CGCGCAa-CGGca -5'
24296 3' -55.4 NC_005263.2 + 3708 0.66 0.68109
Target:  5'- cGACGCCaaugcCGCGCGCGUUGauaCGc -3'
miRNA:   3'- cUUGUGGaguu-GCGCGCGCAACg--GCa -5'
24296 3' -55.4 NC_005263.2 + 20352 0.66 0.670017
Target:  5'- -cGCACCUCgGGgGCGCGCaugGCUGa -3'
miRNA:   3'- cuUGUGGAG-UUgCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 18440 0.66 0.625469
Target:  5'- uGAAC-CgCUCGAgGUGCGCGUgaagcaGCCGc -3'
miRNA:   3'- -CUUGuG-GAGUUgCGCGCGCAa-----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 43852 0.68 0.505176
Target:  5'- cGGGCGCaaCAACGUGCGCGgcauccugacGCCGa -3'
miRNA:   3'- -CUUGUGgaGUUGCGCGCGCaa--------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 5251 0.68 0.526469
Target:  5'- aGGCGCCgUCAucaGCGgGCGgUGCCGg -3'
miRNA:   3'- cUUGUGG-AGUug-CGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 24686 0.68 0.526469
Target:  5'- gGGGCGCCgguaacggCGGCGCGC-CGaacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-------GUUGCGCGcGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 25716 0.68 0.537242
Target:  5'- uGGGCGCCUCuuuccuGGCGCuGCGCGccgUGCaCGa -3'
miRNA:   3'- -CUUGUGGAG------UUGCG-CGCGCa--ACG-GCa -5'
24296 3' -55.4 NC_005263.2 + 8989 0.68 0.547002
Target:  5'- cGAGCGCCgacgcaCGGCGCacgagucGCGCGUacucGCCGUc -3'
miRNA:   3'- -CUUGUGGa-----GUUGCG-------CGCGCAa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 18861 0.68 0.547002
Target:  5'- uGAACaacgcguGCCUCGGCGCGCcgcuGCGc-GCCGa -3'
miRNA:   3'- -CUUG-------UGGAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 17485 0.67 0.603189
Target:  5'- uGAACGCCcUGAuCGCGCGCGgcgcGUCGa -3'
miRNA:   3'- -CUUGUGGaGUU-GCGCGCGCaa--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 43499 0.67 0.614321
Target:  5'- cGGCACCUCGAagcUGCcgGCGCG--GCCGUu -3'
miRNA:   3'- cUUGUGGAGUU---GCG--CGCGCaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 34050 0.66 0.625469
Target:  5'- cGGCGCgCUCAAUGCGCucgacGCGgcGcCCGUg -3'
miRNA:   3'- cUUGUG-GAGUUGCGCG-----CGCaaC-GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.