miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 20352 0.66 0.670017
Target:  5'- -cGCACCUCgGGgGCGCGCaugGCUGa -3'
miRNA:   3'- cuUGUGGAG-UUgCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 34916 0.66 0.670017
Target:  5'- cGAAUgucgACCUgUGAUGCGCGCGgaGCUGa -3'
miRNA:   3'- -CUUG----UGGA-GUUGCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 3940 0.66 0.68109
Target:  5'- uAGCGCCUCGcACGCGCcagccaGCGagccuggcagGCCGUu -3'
miRNA:   3'- cUUGUGGAGU-UGCGCG------CGCaa--------CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 4462 0.68 0.559006
Target:  5'- cGAGCACUUCuucguccguGCGCGCGgGUcGgCGUg -3'
miRNA:   3'- -CUUGUGGAGu--------UGCGCGCgCAaCgGCA- -5'
24296 3' -55.4 NC_005263.2 + 18861 0.68 0.547002
Target:  5'- uGAACaacgcguGCCUCGGCGCGCcgcuGCGc-GCCGa -3'
miRNA:   3'- -CUUG-------UGGAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 8989 0.68 0.547002
Target:  5'- cGAGCGCCgacgcaCGGCGCacgagucGCGCGUacucGCCGUc -3'
miRNA:   3'- -CUUGUGGa-----GUUGCG-------CGCGCAa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 31240 0.74 0.25325
Target:  5'- gGGGCGCUUCGguuccGCGCgGCGCGgcGCCGg -3'
miRNA:   3'- -CUUGUGGAGU-----UGCG-CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 32534 0.73 0.298521
Target:  5'- -cGCGCUaccgucauucggcguUCAGCGCGCGCGUcugcGCCGa -3'
miRNA:   3'- cuUGUGG---------------AGUUGCGCGCGCAa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 15550 0.72 0.303073
Target:  5'- ---aACCUCGGCGaguaaGCGCGUgGCCGg -3'
miRNA:   3'- cuugUGGAGUUGCg----CGCGCAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 25417 0.72 0.334777
Target:  5'- aGACAgccauCCUCGGCGCGUGCGgUGCgGg -3'
miRNA:   3'- cUUGU-----GGAGUUGCGCGCGCaACGgCa -5'
24296 3' -55.4 NC_005263.2 + 45796 0.72 0.334777
Target:  5'- --cCGCCaguUCAACGCGgGCG-UGCCGg -3'
miRNA:   3'- cuuGUGG---AGUUGCGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 16342 0.71 0.36884
Target:  5'- aAACGCUUCGACGagacgaaGCGCGcgGCCGc -3'
miRNA:   3'- cUUGUGGAGUUGCg------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 42465 0.71 0.377718
Target:  5'- aGAAaACCgguaacggCAugGUGCGCGUUGCCu- -3'
miRNA:   3'- -CUUgUGGa-------GUugCGCGCGCAACGGca -5'
24296 3' -55.4 NC_005263.2 + 23796 0.7 0.395902
Target:  5'- cGAcCGCCgaugCGACGCGCGCGa-GCCa- -3'
miRNA:   3'- -CUuGUGGa---GUUGCGCGCGCaaCGGca -5'
24296 3' -55.4 NC_005263.2 + 19401 0.7 0.411795
Target:  5'- -cGCGCaguacggCAACGCGCGCGUugagguguucggcgUGCCGc -3'
miRNA:   3'- cuUGUGga-----GUUGCGCGCGCA--------------ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 27118 0.69 0.463772
Target:  5'- cGGCACgUCGACGCGCaggcGCGcaGCCGc -3'
miRNA:   3'- cUUGUGgAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 43852 0.68 0.505176
Target:  5'- cGGGCGCaaCAACGUGCGCGgcauccugacGCCGa -3'
miRNA:   3'- -CUUGUGgaGUUGCGCGCGCaa--------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 5251 0.68 0.526469
Target:  5'- aGGCGCCgUCAucaGCGgGCGgUGCCGg -3'
miRNA:   3'- cUUGUGG-AGUug-CGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 24686 0.68 0.526469
Target:  5'- gGGGCGCCgguaacggCGGCGCGC-CGaacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-------GUUGCGCGcGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 25716 0.68 0.537242
Target:  5'- uGGGCGCCUCuuuccuGGCGCuGCGCGccgUGCaCGa -3'
miRNA:   3'- -CUUGUGGAG------UUGCG-CGCGCa--ACG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.