Results 41 - 60 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 43499 | 0.67 | 0.614321 |
Target: 5'- cGGCACCUCGAagcUGCcgGCGCG--GCCGUu -3' miRNA: 3'- cUUGUGGAGUU---GCG--CGCGCaaCGGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 34050 | 0.66 | 0.625469 |
Target: 5'- cGGCGCgCUCAAUGCGCucgacGCGgcGcCCGUg -3' miRNA: 3'- cUUGUG-GAGUUGCGCG-----CGCaaC-GGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 18440 | 0.66 | 0.625469 |
Target: 5'- uGAAC-CgCUCGAgGUGCGCGUgaagcaGCCGc -3' miRNA: 3'- -CUUGuG-GAGUUgCGCGCGCAa-----CGGCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 29201 | 0.71 | 0.38674 |
Target: 5'- --uCACgCUCGACGCaggccgGCGCGUauuUGCCGUc -3' miRNA: 3'- cuuGUG-GAGUUGCG------CGCGCA---ACGGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 44749 | 0.71 | 0.38674 |
Target: 5'- -cGCACugucuggucgCUCGAcCGCGCGCGgcGCCGg -3' miRNA: 3'- cuUGUG----------GAGUU-GCGCGCGCaaCGGCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 38542 | 0.7 | 0.399606 |
Target: 5'- cAGCGCCuggacacguucuuugUCGACcuguGCGaCGCGUUGCCGUc -3' miRNA: 3'- cUUGUGG---------------AGUUG----CGC-GCGCAACGGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 33831 | 0.7 | 0.443744 |
Target: 5'- -cGCuuauCC-CAAUGCGCGCGUUgcGCCGg -3' miRNA: 3'- cuUGu---GGaGUUGCGCGCGCAA--CGGCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 44388 | 0.69 | 0.463772 |
Target: 5'- uGGACAUgcguaUCAACGCGCGCGgcaUUGgCGUc -3' miRNA: 3'- -CUUGUGg----AGUUGCGCGCGC---AACgGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 6173 | 0.69 | 0.472937 |
Target: 5'- -uGCGCCUUgAGCgGCGCGCGUUucgcauucaggaaGCCGg -3' miRNA: 3'- cuUGUGGAG-UUG-CGCGCGCAA-------------CGGCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 30322 | 0.69 | 0.472937 |
Target: 5'- -uGCGCCUCGaaaauuuGCGagaaGCGCG-UGCCGa -3' miRNA: 3'- cuUGUGGAGU-------UGCg---CGCGCaACGGCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 37440 | 0.72 | 0.343073 |
Target: 5'- -cAUACgUCGGCGCGCGCGgucUGCgCGg -3' miRNA: 3'- cuUGUGgAGUUGCGCGCGCa--ACG-GCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 22325 | 0.72 | 0.343073 |
Target: 5'- cGGCACgCUCAGCGCGCGgGcUGCUu- -3' miRNA: 3'- cUUGUG-GAGUUGCGCGCgCaACGGca -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 33425 | 0.72 | 0.310777 |
Target: 5'- uGAGCGCC---GCGCGCGCGUaGCgGUc -3' miRNA: 3'- -CUUGUGGaguUGCGCGCGCAaCGgCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 9796 | 0.73 | 0.288108 |
Target: 5'- gGGGCGCCUCGcCGCGUGCGgcauaGCCu- -3' miRNA: 3'- -CUUGUGGAGUuGCGCGCGCaa---CGGca -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 37222 | 0.74 | 0.259933 |
Target: 5'- -uACGCCgcucaCGACGCGCGCcggUGCCGa -3' miRNA: 3'- cuUGUGGa----GUUGCGCGCGca-ACGGCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 27635 | 0.74 | 0.25325 |
Target: 5'- --uUACCUCGACG-G-GCGUUGCCGUa -3' miRNA: 3'- cuuGUGGAGUUGCgCgCGCAACGGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 41477 | 0.75 | 0.199311 |
Target: 5'- -cGCugCUCGACGCGgGCGagucgGCCGUc -3' miRNA: 3'- cuUGugGAGUUGCGCgCGCaa---CGGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 44655 | 0.76 | 0.18877 |
Target: 5'- -uGCGCCUCGAUGCGuCGCGcgcGCCGa -3' miRNA: 3'- cuUGUGGAGUUGCGC-GCGCaa-CGGCa -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 3722 | 0.77 | 0.15138 |
Target: 5'- uGAGCGCCUCGcgcACGCcgggccggaucaGCGCGUacgUGCCGUa -3' miRNA: 3'- -CUUGUGGAGU---UGCG------------CGCGCA---ACGGCA- -5' |
|||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 22017 | 0.66 | 0.68109 |
Target: 5'- cGAGCAgCUCGACGCGCucuauGCGcacgUGCg-- -3' miRNA: 3'- -CUUGUgGAGUUGCGCG-----CGCa---ACGgca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home