miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 15556 0.66 0.636623
Target:  5'- cGGCGCa--GACGCGCGCGcugaacGCCGa -3'
miRNA:   3'- cUUGUGgagUUGCGCGCGCaa----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 25892 0.66 0.633277
Target:  5'- cGACGCCggCGAcggcCGCGacguacguaacgguCGCGUUGCCGg -3'
miRNA:   3'- cUUGUGGa-GUU----GCGC--------------GCGCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 34050 0.66 0.625469
Target:  5'- cGGCGCgCUCAAUGCGCucgacGCGgcGcCCGUg -3'
miRNA:   3'- cUUGUG-GAGUUGCGCG-----CGCaaC-GGCA- -5'
24296 3' -55.4 NC_005263.2 + 20969 0.66 0.625469
Target:  5'- cGGACAUCgcCGACGCggcugcgcgccuGCGCGUcgacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-GUUGCG------------CGCGCA-----ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 15780 0.66 0.625469
Target:  5'- cAGCugCUCGACGaccacuGCGCGcUGCuCGUc -3'
miRNA:   3'- cUUGugGAGUUGCg-----CGCGCaACG-GCA- -5'
24296 3' -55.4 NC_005263.2 + 18440 0.66 0.625469
Target:  5'- uGAAC-CgCUCGAgGUGCGCGUgaagcaGCCGc -3'
miRNA:   3'- -CUUGuG-GAGUUgCGCGCGCAa-----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 21185 0.67 0.614321
Target:  5'- cGGACGCg--GACGCGCGCGgcGCgGg -3'
miRNA:   3'- -CUUGUGgagUUGCGCGCGCaaCGgCa -5'
24296 3' -55.4 NC_005263.2 + 30696 0.67 0.614321
Target:  5'- -uGCACCUgCGACaccgcccgccagGCGCGCGgccgcGCCGg -3'
miRNA:   3'- cuUGUGGA-GUUG------------CGCGCGCaa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 11959 0.67 0.614321
Target:  5'- --uCGCCUCGA-GCGCGC---GCCGUa -3'
miRNA:   3'- cuuGUGGAGUUgCGCGCGcaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 26499 0.67 0.614321
Target:  5'- -uGCGCCUUGAuguaacuguUGCGCGCGgcGUCGa -3'
miRNA:   3'- cuUGUGGAGUU---------GCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 36114 0.67 0.614321
Target:  5'- cGAGCugGCCcguaacaCGACGCuGCGCGccUGCCGUa -3'
miRNA:   3'- -CUUG--UGGa------GUUGCG-CGCGCa-ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 43499 0.67 0.614321
Target:  5'- cGGCACCUCGAagcUGCcgGCGCG--GCCGUu -3'
miRNA:   3'- cUUGUGGAGUU---GCG--CGCGCaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 17485 0.67 0.603189
Target:  5'- uGAACGCCcUGAuCGCGCGCGgcgcGUCGa -3'
miRNA:   3'- -CUUGUGGaGUU-GCGCGCGCaa--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 9071 0.67 0.603189
Target:  5'- uAGCGCCUCGACGUGCcaguuCGggucgaucgGCCGg -3'
miRNA:   3'- cUUGUGGAGUUGCGCGc----GCaa-------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 41484 0.67 0.603189
Target:  5'- cGACugCUCGaccGCGCcgaGCGCGccGCCGa -3'
miRNA:   3'- cUUGugGAGU---UGCG---CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 19622 0.67 0.602077
Target:  5'- cGAACGCCUCGuACGCGUugauggcugaaguGaUGUcGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU-UGCGCG-------------C-GCAaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 41536 0.67 0.592082
Target:  5'- -uGCGCCUgcgcaAACGCGCGgCGc-GCCGUg -3'
miRNA:   3'- cuUGUGGAg----UUGCGCGC-GCaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 10107 0.67 0.592082
Target:  5'- cGGCACCaaUCGugGCGaguuCGUUGCCGc -3'
miRNA:   3'- cUUGUGG--AGUugCGCgc--GCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 29504 0.67 0.590974
Target:  5'- cGAACGCCgcugcggcguccgUCGGCGCGCcaGCaGUgGCCGg -3'
miRNA:   3'- -CUUGUGG-------------AGUUGCGCG--CG-CAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 27105 0.67 0.579906
Target:  5'- uGGCGCUUCGACGgGCGCGgcGaauugcaccgaacCCGUa -3'
miRNA:   3'- cUUGUGGAGUUGCgCGCGCaaC-------------GGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.