miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 5' -56.2 NC_005263.2 + 46236 0.67 0.533147
Target:  5'- aGGCuGCAA-GCGCG-CCGGUGgUCu -3'
miRNA:   3'- aCUGcCGUUaCGCGUaGGCCACgAGc -5'
24296 5' -56.2 NC_005263.2 + 29695 0.67 0.522473
Target:  5'- -aACGGCGucaggaucGUGCGCAcCCGcGUGC-CGg -3'
miRNA:   3'- acUGCCGU--------UACGCGUaGGC-CACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 24949 0.68 0.501381
Target:  5'- gGACGGCGGUGCGCgGUUCGcagaUCGg -3'
miRNA:   3'- aCUGCCGUUACGCG-UAGGCcacgAGC- -5'
24296 5' -56.2 NC_005263.2 + 26095 0.68 0.489941
Target:  5'- -uGCGGCcgaGCGCGUCCuGGUacgcgccGCUCGa -3'
miRNA:   3'- acUGCCGuuaCGCGUAGG-CCA-------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 46161 0.68 0.480672
Target:  5'- -cGCGGUugccgGCGUcgCCGGUGC-CGg -3'
miRNA:   3'- acUGCCGuua--CGCGuaGGCCACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 9191 0.68 0.480672
Target:  5'- cGAgcuCGGCGcgGCGC--CCGGcuUGCUCGu -3'
miRNA:   3'- aCU---GCCGUuaCGCGuaGGCC--ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 38320 0.68 0.470475
Target:  5'- -cGCGGCGAgGCGCccccGUUCGGUGCg-- -3'
miRNA:   3'- acUGCCGUUaCGCG----UAGGCCACGagc -5'
24296 5' -56.2 NC_005263.2 + 14976 0.68 0.470475
Target:  5'- cUGGCGGCAGcgaucUGCGCGUgaCGuucUGCUCGc -3'
miRNA:   3'- -ACUGCCGUU-----ACGCGUAg-GCc--ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 34004 0.68 0.470475
Target:  5'- cGACGGCGAccgccGCGCAgCCGGUaccaGC-CGa -3'
miRNA:   3'- aCUGCCGUUa----CGCGUaGGCCA----CGaGC- -5'
24296 5' -56.2 NC_005263.2 + 39098 0.69 0.457385
Target:  5'- gGACGGCGaguacgcgcgacucGUGCGCcgugcgUCGGcGCUCGu -3'
miRNA:   3'- aCUGCCGU--------------UACGCGua----GGCCaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 10186 0.69 0.450418
Target:  5'- cGGCGGCGcgccUGCGC--CCGGcUGUUCGu -3'
miRNA:   3'- aCUGCCGUu---ACGCGuaGGCC-ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 18766 0.69 0.440567
Target:  5'- aGGCGGCGcgGUGCucgcgCUGGUuaucguGCUCGc -3'
miRNA:   3'- aCUGCCGUuaCGCGua---GGCCA------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 45171 0.69 0.440567
Target:  5'- cGGCGGCGAUgGCGCAUUCGcGaGCauggCGg -3'
miRNA:   3'- aCUGCCGUUA-CGCGUAGGC-CaCGa---GC- -5'
24296 5' -56.2 NC_005263.2 + 17756 0.69 0.411771
Target:  5'- cGGCGGCA--GCGCggCCGc-GCUCGg -3'
miRNA:   3'- aCUGCCGUuaCGCGuaGGCcaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 26536 0.69 0.411771
Target:  5'- cGGCGGCGAgcacgcgGCGCuggaacggCCaGUGCUCu -3'
miRNA:   3'- aCUGCCGUUa------CGCGua------GGcCACGAGc -5'
24296 5' -56.2 NC_005263.2 + 27917 0.7 0.402434
Target:  5'- cGACGGCg--GCGCGUcgcCCGGcgcGCUCu -3'
miRNA:   3'- aCUGCCGuuaCGCGUA---GGCCa--CGAGc -5'
24296 5' -56.2 NC_005263.2 + 21104 0.7 0.393232
Target:  5'- gGGCGGCGAcgagcccgGCGCAgCgGGUGCUg- -3'
miRNA:   3'- aCUGCCGUUa-------CGCGUaGgCCACGAgc -5'
24296 5' -56.2 NC_005263.2 + 47779 0.7 0.393232
Target:  5'- gGGCGGUAcgGC-CAuUCCGGUGCa-- -3'
miRNA:   3'- aCUGCCGUuaCGcGU-AGGCCACGagc -5'
24296 5' -56.2 NC_005263.2 + 37214 0.7 0.390498
Target:  5'- -cGCGGCGAUacgccgcucacgacGCGCG-CCGGUGC-CGa -3'
miRNA:   3'- acUGCCGUUA--------------CGCGUaGGCCACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 30926 0.7 0.366461
Target:  5'- cGACGGCGuacgcgcgagcUGCGCAUUCGGcuuCUCGg -3'
miRNA:   3'- aCUGCCGUu----------ACGCGUAGGCCac-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.