miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24299 3' -57.8 NC_005263.2 + 44589 0.66 0.552845
Target:  5'- --gCGA--GACGCugaagaagauuGCCGCGCGCGAc- -3'
miRNA:   3'- cuaGCUagCUGCG-----------CGGCGCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 30583 0.66 0.552845
Target:  5'- --cCGcugCG-CGCGCUGUacaGCGCGAUCa -3'
miRNA:   3'- cuaGCua-GCuGCGCGGCG---CGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 21914 0.66 0.552845
Target:  5'- cAUCGcgCGGC-CGCCGCGCGg---- -3'
miRNA:   3'- cUAGCuaGCUGcGCGGCGCGCgcuag -5'
24299 3' -57.8 NC_005263.2 + 6053 0.66 0.552845
Target:  5'- -uUCGuuggCGGCGCGCuucaCGCGCGcCGAc- -3'
miRNA:   3'- cuAGCua--GCUGCGCG----GCGCGC-GCUag -5'
24299 3' -57.8 NC_005263.2 + 44758 0.66 0.542238
Target:  5'- uGGUCGcUCGaccGCGCGCgGCGCcgGCGGc- -3'
miRNA:   3'- -CUAGCuAGC---UGCGCGgCGCG--CGCUag -5'
24299 3' -57.8 NC_005263.2 + 37843 0.66 0.542238
Target:  5'- --gCGGcgCGAUGCGaaGCGCaucGCGAUCg -3'
miRNA:   3'- cuaGCUa-GCUGCGCggCGCG---CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 30504 0.66 0.542238
Target:  5'- -uUUGAUCGucaGCGCGUCGUgaccccgcuGCGCGAg- -3'
miRNA:   3'- cuAGCUAGC---UGCGCGGCG---------CGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 22822 0.66 0.542238
Target:  5'- ---aGAUC-ACGCuGUCGCGCGCgcgGAUCg -3'
miRNA:   3'- cuagCUAGcUGCG-CGGCGCGCG---CUAG- -5'
24299 3' -57.8 NC_005263.2 + 41333 0.66 0.542238
Target:  5'- --gCGAcuUCGACGaggccgagcuCGCCcgGCGCGCGAUg -3'
miRNA:   3'- cuaGCU--AGCUGC----------GCGG--CGCGCGCUAg -5'
24299 3' -57.8 NC_005263.2 + 28789 0.66 0.533801
Target:  5'- cAUCGAccaccgcacagcCGGCGgGCCGCGUuuccaagaacucgccGCGAUCa -3'
miRNA:   3'- cUAGCUa-----------GCUGCgCGGCGCG---------------CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 26436 0.66 0.531699
Target:  5'- cGGUCGAUgCGAaucugcagcaGCGCUugGUGCGCGAg- -3'
miRNA:   3'- -CUAGCUA-GCUg---------CGCGG--CGCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 18279 0.66 0.531699
Target:  5'- --cCGggCGAUGCGCuCGuCGUGCGcgCu -3'
miRNA:   3'- cuaGCuaGCUGCGCG-GC-GCGCGCuaG- -5'
24299 3' -57.8 NC_005263.2 + 14437 0.66 0.531699
Target:  5'- --gCGA-CGGCGUGCgCGCGCGCc--- -3'
miRNA:   3'- cuaGCUaGCUGCGCG-GCGCGCGcuag -5'
24299 3' -57.8 NC_005263.2 + 6525 0.66 0.521236
Target:  5'- --gCGAaagCGGCGCGCauaCGCGCGAa- -3'
miRNA:   3'- cuaGCUa--GCUGCGCGgc-GCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 17791 0.66 0.521236
Target:  5'- aAUCGAUCgucgucaaGACGCcgGCCGCGCccgGCGcuGUCg -3'
miRNA:   3'- cUAGCUAG--------CUGCG--CGGCGCG---CGC--UAG- -5'
24299 3' -57.8 NC_005263.2 + 18519 0.66 0.521236
Target:  5'- --gCGAUCGGCgGCGUCGacaccgcgaGCGCGuUCa -3'
miRNA:   3'- cuaGCUAGCUG-CGCGGCg--------CGCGCuAG- -5'
24299 3' -57.8 NC_005263.2 + 8388 0.66 0.521236
Target:  5'- ---aGGUCGACGCGgcCCGCGC-CGGc- -3'
miRNA:   3'- cuagCUAGCUGCGC--GGCGCGcGCUag -5'
24299 3' -57.8 NC_005263.2 + 24304 0.67 0.510853
Target:  5'- cGAUUGGcUCGcGCGCGUCGCaucgGCGGUCg -3'
miRNA:   3'- -CUAGCU-AGC-UGCGCGGCGcg--CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 7016 0.67 0.510853
Target:  5'- gGAUUGG-CGGCGCGaaaCGUGuCGaCGAUCg -3'
miRNA:   3'- -CUAGCUaGCUGCGCg--GCGC-GC-GCUAG- -5'
24299 3' -57.8 NC_005263.2 + 32867 0.67 0.510853
Target:  5'- --aCGAguUCGAUGUGCCGgCGgGCGGc- -3'
miRNA:   3'- cuaGCU--AGCUGCGCGGC-GCgCGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.