miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24299 5' -55.8 NC_005263.2 + 25123 0.66 0.657353
Target:  5'- cUGAUGUugAGGuUGGCgaUCGUCGGu -3'
miRNA:   3'- uACUGCAugUCC-GCCGacAGCAGCUc -5'
24299 5' -55.8 NC_005263.2 + 2910 0.66 0.657353
Target:  5'- -aGACGUGCuGcGCGGCcGUCGUa--- -3'
miRNA:   3'- uaCUGCAUGuC-CGCCGaCAGCAgcuc -5'
24299 5' -55.8 NC_005263.2 + 8842 0.66 0.657353
Target:  5'- uUGAUGUAggUAGGCGGCg--CG-CGGGg -3'
miRNA:   3'- uACUGCAU--GUCCGCCGacaGCaGCUC- -5'
24299 5' -55.8 NC_005263.2 + 42063 0.66 0.635143
Target:  5'- -cGGCGcGCAGGCGGUgaguUCGUaCGAu -3'
miRNA:   3'- uaCUGCaUGUCCGCCGac--AGCA-GCUc -5'
24299 5' -55.8 NC_005263.2 + 32318 0.66 0.635143
Target:  5'- -gGACGaGCAGcGCGcaGUgGUCGUCGAGc -3'
miRNA:   3'- uaCUGCaUGUC-CGC--CGaCAGCAGCUC- -5'
24299 5' -55.8 NC_005263.2 + 41663 0.67 0.59077
Target:  5'- ---uCGUGCucuGGCGGCaGaUCGUCGGGc -3'
miRNA:   3'- uacuGCAUGu--CCGCCGaC-AGCAGCUC- -5'
24299 5' -55.8 NC_005263.2 + 14245 0.68 0.536155
Target:  5'- cGUGGCGUGCGGGCuGGCUugCGgCGGc -3'
miRNA:   3'- -UACUGCAUGUCCG-CCGAcaGCaGCUc -5'
24299 5' -55.8 NC_005263.2 + 26030 0.68 0.493766
Target:  5'- uUGuCGaGCuGGCGGUUGagcUCGUCGAGc -3'
miRNA:   3'- uACuGCaUGuCCGCCGAC---AGCAGCUC- -5'
24299 5' -55.8 NC_005263.2 + 32920 0.69 0.433279
Target:  5'- -cGACGUcGCGcGGCGGCUcgCGUCGAu -3'
miRNA:   3'- uaCUGCA-UGU-CCGCCGAcaGCAGCUc -5'
24299 5' -55.8 NC_005263.2 + 23609 0.7 0.38631
Target:  5'- cGUGACGUuc-GGCGGCaccGUgGUCGAGc -3'
miRNA:   3'- -UACUGCAuguCCGCCGa--CAgCAGCUC- -5'
24299 5' -55.8 NC_005263.2 + 8903 0.71 0.342827
Target:  5'- --cGCGcaaUACuGGCGGCaggaUGUCGUCGAGg -3'
miRNA:   3'- uacUGC---AUGuCCGCCG----ACAGCAGCUC- -5'
24299 5' -55.8 NC_005263.2 + 41166 0.76 0.179015
Target:  5'- -cGGCGU--GGGCGGCcGUCGUCGAu -3'
miRNA:   3'- uaCUGCAugUCCGCCGaCAGCAGCUc -5'
24299 5' -55.8 NC_005263.2 + 30645 1.06 0.001159
Target:  5'- cAUGACGUACAGGCGGCUGUCGUCGAGu -3'
miRNA:   3'- -UACUGCAUGUCCGCCGACAGCAGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.