Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 243 | 3' | -58 | AC_000008.1 | + | 10985 | 0.66 | 0.44886 |
|
Target: 5'- cGCaGUCCGgccGGUCcgagacucgaaccGGGGgUCCCGCg -3' miRNA: 3'- uCGaCAGGUa--CCAGa------------CCUCgAGGGCG- -5' |
|||||||
| 243 | 3' | -58 | AC_000008.1 | + | 12173 | 0.66 | 0.442876 |
|
Target: 5'- cAGCUGgggCCGgaccUGGgCUGGcgguGGCaCCCGCg -3' miRNA: 3'- -UCGACa--GGU----ACCaGACC----UCGaGGGCG- -5' |
|||||||
| 243 | 3' | -58 | AC_000008.1 | + | 12691 | 0.66 | 0.433004 |
|
Target: 5'- cAGCcgGUCCAgguUGGUCUGcacGUUgCCGCu -3' miRNA: 3'- -UCGa-CAGGU---ACCAGACcu-CGAgGGCG- -5' |
|||||||
| 243 | 3' | -58 | AC_000008.1 | + | 12103 | 0.67 | 0.385642 |
|
Target: 5'- aGGCUGUgCAUcagcucgcGGUCgcuGAGCUCgCGCc -3' miRNA: 3'- -UCGACAgGUA--------CCAGac-CUCGAGgGCG- -5' |
|||||||
| 243 | 3' | -58 | AC_000008.1 | + | 10524 | 0.7 | 0.226493 |
|
Target: 5'- aAGUgcUCCAUGGUCgGGAcGCUCUgGCc -3' miRNA: 3'- -UCGacAGGUACCAGaCCU-CGAGGgCG- -5' |
|||||||
| 243 | 3' | -58 | AC_000008.1 | + | 8375 | 0.71 | 0.220505 |
|
Target: 5'- cGGC-GUCa--GGUCaggcgGGAGCUCCUGCa -3' miRNA: 3'- -UCGaCAGguaCCAGa----CCUCGAGGGCG- -5' |
|||||||
| 243 | 3' | -58 | AC_000008.1 | + | 8349 | 1.12 | 0.000165 |
|
Target: 5'- gAGCUGUCCAUGGUCUGGAGCUCCCGCg -3' miRNA: 3'- -UCGACAGGUACCAGACCUCGAGGGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home