miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24301 3' -54.8 NC_005263.2 + 38573 0.66 0.700892
Target:  5'- cCGCGUCGGuCGCU-GCCg----CGCAc -3'
miRNA:   3'- -GCGCAGCU-GCGAuCGGaaguaGCGUu -5'
24301 3' -54.8 NC_005263.2 + 26208 0.66 0.700892
Target:  5'- cCGCG-CGAUGCggcGGCCgu--UCGCGAa -3'
miRNA:   3'- -GCGCaGCUGCGa--UCGGaaguAGCGUU- -5'
24301 3' -54.8 NC_005263.2 + 5988 0.66 0.700892
Target:  5'- gCGCGcagcaCGACGCUAuCC-UCGUCGUGAa -3'
miRNA:   3'- -GCGCa----GCUGCGAUcGGaAGUAGCGUU- -5'
24301 3' -54.8 NC_005263.2 + 29723 0.66 0.700892
Target:  5'- gGcCGUCGcguCGCUGGCUgccuUUCAUgGCGAu -3'
miRNA:   3'- gC-GCAGCu--GCGAUCGG----AAGUAgCGUU- -5'
24301 3' -54.8 NC_005263.2 + 28095 0.66 0.68981
Target:  5'- uGUGUUGGCGC-GGCCg--AUCGCGu -3'
miRNA:   3'- gCGCAGCUGCGaUCGGaagUAGCGUu -5'
24301 3' -54.8 NC_005263.2 + 18738 0.66 0.674201
Target:  5'- gCGCGUCGGCGCcggguuaccggcGCCUgcUCG-CGCAc -3'
miRNA:   3'- -GCGCAGCUGCGau----------CGGA--AGUaGCGUu -5'
24301 3' -54.8 NC_005263.2 + 34062 0.66 0.667484
Target:  5'- uGCGcUCGACGCggcgcccgUGGCCgaacCGUCGCc- -3'
miRNA:   3'- gCGC-AGCUGCG--------AUCGGaa--GUAGCGuu -5'
24301 3' -54.8 NC_005263.2 + 41565 0.66 0.656264
Target:  5'- gGCGgCGAUGCgAGCUUUCG-CGCGu -3'
miRNA:   3'- gCGCaGCUGCGaUCGGAAGUaGCGUu -5'
24301 3' -54.8 NC_005263.2 + 6511 0.66 0.645019
Target:  5'- gCGCGUUGAaGCcGGUCgugagCAUCGCGAc -3'
miRNA:   3'- -GCGCAGCUgCGaUCGGaa---GUAGCGUU- -5'
24301 3' -54.8 NC_005263.2 + 19963 0.66 0.645019
Target:  5'- uCGCGugcUCGGCGCUGGCag-CGU-GCAAg -3'
miRNA:   3'- -GCGC---AGCUGCGAUCGgaaGUAgCGUU- -5'
24301 3' -54.8 NC_005263.2 + 36576 0.67 0.633763
Target:  5'- gGUGaCGACGaaccgcgccGCCUUCAUCGCGc -3'
miRNA:   3'- gCGCaGCUGCgau------CGGAAGUAGCGUu -5'
24301 3' -54.8 NC_005263.2 + 25801 0.67 0.633763
Target:  5'- aCGCccgCGACGCU-GCCaUUCGgguUCGCAAu -3'
miRNA:   3'- -GCGca-GCUGCGAuCGG-AAGU---AGCGUU- -5'
24301 3' -54.8 NC_005263.2 + 4224 0.67 0.611256
Target:  5'- gCGCGUCGACGCUcgaaaacgucGGCg-UCAggaugccgCGCAc -3'
miRNA:   3'- -GCGCAGCUGCGA----------UCGgaAGUa-------GCGUu -5'
24301 3' -54.8 NC_005263.2 + 9900 0.67 0.611256
Target:  5'- uCGuCGUCGGCGCgcggcgucgGGCCUUCuuccUCGUu- -3'
miRNA:   3'- -GC-GCAGCUGCGa--------UCGGAAGu---AGCGuu -5'
24301 3' -54.8 NC_005263.2 + 9464 0.67 0.600026
Target:  5'- gGCGUCGAUGCgcgacgcGgCUUCAUuCGCGc -3'
miRNA:   3'- gCGCAGCUGCGau-----CgGAAGUA-GCGUu -5'
24301 3' -54.8 NC_005263.2 + 33808 0.67 0.600026
Target:  5'- -aCGUCGACGUauucauCCUUCAUCGCu- -3'
miRNA:   3'- gcGCAGCUGCGauc---GGAAGUAGCGuu -5'
24301 3' -54.8 NC_005263.2 + 2178 0.67 0.600026
Target:  5'- gCGCGa-GACGCgcccAGCCUUCgGUCGCc- -3'
miRNA:   3'- -GCGCagCUGCGa---UCGGAAG-UAGCGuu -5'
24301 3' -54.8 NC_005263.2 + 20997 0.67 0.588825
Target:  5'- gCGCGUCGACGUgccGGCgUUUCAg-GCGAu -3'
miRNA:   3'- -GCGCAGCUGCGa--UCG-GAAGUagCGUU- -5'
24301 3' -54.8 NC_005263.2 + 38629 0.67 0.588825
Target:  5'- aGCGcCGGCGCgaaugaAGCCg-CGUCGCGc -3'
miRNA:   3'- gCGCaGCUGCGa-----UCGGaaGUAGCGUu -5'
24301 3' -54.8 NC_005263.2 + 35461 0.68 0.577661
Target:  5'- aGCGUUGACaGCgggcGCCgaaaccgacgUCGUCGCAGu -3'
miRNA:   3'- gCGCAGCUG-CGau--CGGa---------AGUAGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.