miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24301 5' -61.7 NC_005263.2 + 18584 0.66 0.392547
Target:  5'- cCCGGCcac-UGCUGGCGcGCCGaCGGa -3'
miRNA:   3'- aGGCCGcuauGCGGCCGC-CGGCaGUC- -5'
24301 5' -61.7 NC_005263.2 + 35689 0.66 0.383907
Target:  5'- gUCCGGCaGGUGauuggggucUGCCGGCcGGCaagGUCGa -3'
miRNA:   3'- -AGGCCG-CUAU---------GCGGCCG-CCGg--CAGUc -5'
24301 5' -61.7 NC_005263.2 + 1949 0.66 0.383907
Target:  5'- aCCGGCGA--CGCCGGCaacCgCGUCGa -3'
miRNA:   3'- aGGCCGCUauGCGGCCGcc-G-GCAGUc -5'
24301 5' -61.7 NC_005263.2 + 42013 0.66 0.383907
Target:  5'- gCCGGCaGUGCgGCCGGCcgcgccaaGGCUuccuGUCGGc -3'
miRNA:   3'- aGGCCGcUAUG-CGGCCG--------CCGG----CAGUC- -5'
24301 5' -61.7 NC_005263.2 + 34371 0.66 0.383907
Target:  5'- aCCGGCaGUGCcCCGGUacCCGUCGGc -3'
miRNA:   3'- aGGCCGcUAUGcGGCCGccGGCAGUC- -5'
24301 5' -61.7 NC_005263.2 + 30634 0.66 0.383907
Target:  5'- aUCagGGCGuucaugACGUacaGGCGGCUGUCGu -3'
miRNA:   3'- -AGg-CCGCua----UGCGg--CCGCCGGCAGUc -5'
24301 5' -61.7 NC_005263.2 + 31258 0.66 0.383907
Target:  5'- -gCGGCGcgGCGCCGGgcaGGUCGa--- -3'
miRNA:   3'- agGCCGCuaUGCGGCCg--CCGGCaguc -5'
24301 5' -61.7 NC_005263.2 + 33844 0.66 0.375395
Target:  5'- -gCGcGCGuUGCGCCGGCcGCCG-CAa -3'
miRNA:   3'- agGC-CGCuAUGCGGCCGcCGGCaGUc -5'
24301 5' -61.7 NC_005263.2 + 37399 0.66 0.375395
Target:  5'- gCUGcGCGAcgugcaucGCGUCGcGCGGCCGUCc- -3'
miRNA:   3'- aGGC-CGCUa-------UGCGGC-CGCCGGCAGuc -5'
24301 5' -61.7 NC_005263.2 + 27521 0.66 0.375395
Target:  5'- gCCGgucGCGGUGCccGUCGGCacGGCCGgCAGg -3'
miRNA:   3'- aGGC---CGCUAUG--CGGCCG--CCGGCaGUC- -5'
24301 5' -61.7 NC_005263.2 + 14092 0.66 0.375395
Target:  5'- gUCGGCuGGUACcgGCUGcGCGGCgGUCGc -3'
miRNA:   3'- aGGCCG-CUAUG--CGGC-CGCCGgCAGUc -5'
24301 5' -61.7 NC_005263.2 + 19162 0.66 0.375395
Target:  5'- aCCGuGC-AUcCGCCGGCgcGGCuCGUCGGc -3'
miRNA:   3'- aGGC-CGcUAuGCGGCCG--CCG-GCAGUC- -5'
24301 5' -61.7 NC_005263.2 + 24249 0.66 0.375395
Target:  5'- -gCGGCGGUACGCCgccagcuucgGGUGGuuG-CAu -3'
miRNA:   3'- agGCCGCUAUGCGG----------CCGCCggCaGUc -5'
24301 5' -61.7 NC_005263.2 + 9494 0.66 0.375395
Target:  5'- gCCGGCGcuauccaucgcGUGCGCgGGCugaaucgugcGGCCGUg-- -3'
miRNA:   3'- aGGCCGC-----------UAUGCGgCCG----------CCGGCAguc -5'
24301 5' -61.7 NC_005263.2 + 27211 0.66 0.374551
Target:  5'- aUCCGGCGucaucccGUGCGCCuccugccacuGGCGcagcGCCGUUg- -3'
miRNA:   3'- -AGGCCGC-------UAUGCGG----------CCGC----CGGCAGuc -5'
24301 5' -61.7 NC_005263.2 + 25872 0.66 0.367844
Target:  5'- gUUCGGCGucgcaaccgggccgACGCCGGCgacGGCCG-CGa -3'
miRNA:   3'- -AGGCCGCua------------UGCGGCCG---CCGGCaGUc -5'
24301 5' -61.7 NC_005263.2 + 12620 0.66 0.367011
Target:  5'- cUUCGGCcAUGCGCUGGaCGuaggugagcacGCCGUCGa -3'
miRNA:   3'- -AGGCCGcUAUGCGGCC-GC-----------CGGCAGUc -5'
24301 5' -61.7 NC_005263.2 + 31526 0.66 0.367011
Target:  5'- cCCGGCGAacgcguCGCCGcCGGCCuuggcGUCGc -3'
miRNA:   3'- aGGCCGCUau----GCGGCcGCCGG-----CAGUc -5'
24301 5' -61.7 NC_005263.2 + 20647 0.66 0.367011
Target:  5'- gCCGcaGUGGccGCGCCGcucgucGCGGCCGUCGa -3'
miRNA:   3'- aGGC--CGCUa-UGCGGC------CGCCGGCAGUc -5'
24301 5' -61.7 NC_005263.2 + 27789 0.66 0.358757
Target:  5'- -gCGGUGAU-CGUcgggaCGGCGGCCGcCAu -3'
miRNA:   3'- agGCCGCUAuGCG-----GCCGCCGGCaGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.