miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 3330 0.66 0.843973
Target:  5'- -uCAACGucuGCGCGccGccGGCGCcgCGCg -3'
miRNA:   3'- cuGUUGCu--CGCGCuaC--UCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 31289 0.66 0.843973
Target:  5'- cGCGuCGAGCGCGucgacgcuAGCcuuCAUCGCa -3'
miRNA:   3'- cUGUuGCUCGCGCuac-----UCGu--GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47997 0.66 0.843973
Target:  5'- uACAACGAcuuggauauGCGCGAcGAcCGCAaucUCGCa -3'
miRNA:   3'- cUGUUGCU---------CGCGCUaCUcGUGU---AGCG- -5'
24302 5' -52.3 NC_005263.2 + 9613 0.66 0.843973
Target:  5'- cGACGcCGAucUGCG-UGAGCGCcUCGCg -3'
miRNA:   3'- -CUGUuGCUc-GCGCuACUCGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 41564 0.66 0.834907
Target:  5'- uGGCGGCGAugcgagcuuucGCGCGuAUGcGCGCcgcuuUCGCu -3'
miRNA:   3'- -CUGUUGCU-----------CGCGC-UACuCGUGu----AGCG- -5'
24302 5' -52.3 NC_005263.2 + 14366 0.66 0.834907
Target:  5'- uGACGACGGGCcCGAUGccgGGC-CGcUCGUc -3'
miRNA:   3'- -CUGUUGCUCGcGCUAC---UCGuGU-AGCG- -5'
24302 5' -52.3 NC_005263.2 + 29065 0.66 0.834907
Target:  5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3'
miRNA:   3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5'
24302 5' -52.3 NC_005263.2 + 20675 0.66 0.833988
Target:  5'- cGCAGuguuugcCGAGCGCGAcGcgacAGCAC-UCGCu -3'
miRNA:   3'- cUGUU-------GCUCGCGCUaC----UCGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 17617 0.66 0.833988
Target:  5'- uGACGAUcaaaacgucgccaGGGCGCcgGAUGuGGCGCAaCGCg -3'
miRNA:   3'- -CUGUUG-------------CUCGCG--CUAC-UCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 9527 0.66 0.825615
Target:  5'- cGCcgUGAGCGCGucgGAcgGCaacGCGUCGCa -3'
miRNA:   3'- cUGuuGCUCGCGCua-CU--CG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 4614 0.66 0.825615
Target:  5'- cGGCAGCuucgaGGUGcCGuaauUGAGCGcCAUCGCg -3'
miRNA:   3'- -CUGUUGc----UCGC-GCu---ACUCGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20949 0.66 0.825615
Target:  5'- uGAUGACGGccGCGCGcUGucGgACAUCGCc -3'
miRNA:   3'- -CUGUUGCU--CGCGCuACu-CgUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7226 0.66 0.825615
Target:  5'- aGGCGACG-GCGCcAUGcGGUGCA-CGCg -3'
miRNA:   3'- -CUGUUGCuCGCGcUAC-UCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 21423 0.66 0.825615
Target:  5'- cGCAuuACGuGCGCaucaAUGGGCGgcCGUCGCg -3'
miRNA:   3'- cUGU--UGCuCGCGc---UACUCGU--GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 8853 0.66 0.825615
Target:  5'- --aGGCG-GCGCGcgGGGCGCGagcccCGCu -3'
miRNA:   3'- cugUUGCuCGCGCuaCUCGUGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 18936 0.66 0.825615
Target:  5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3'
miRNA:   3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5'
24302 5' -52.3 NC_005263.2 + 47401 0.66 0.825615
Target:  5'- cACGGCGcuCGCGGgcgGcGGCACgAUCGCg -3'
miRNA:   3'- cUGUUGCucGCGCUa--C-UCGUG-UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 41512 0.66 0.816106
Target:  5'- cACGGCGAGCuCGAgaaaucgGAGCGCGUgucagGCg -3'
miRNA:   3'- cUGUUGCUCGcGCUa------CUCGUGUAg----CG- -5'
24302 5' -52.3 NC_005263.2 + 13394 0.66 0.816106
Target:  5'- gGAC-ACGAuCGUG-UGcaGGCGCGUCGCa -3'
miRNA:   3'- -CUGuUGCUcGCGCuAC--UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 25698 0.66 0.816106
Target:  5'- cACGGCGAGCacgGCGgcGcGUACGuUCGCg -3'
miRNA:   3'- cUGUUGCUCG---CGCuaCuCGUGU-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.