Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 3330 | 0.66 | 0.843973 |
Target: 5'- -uCAACGucuGCGCGccGccGGCGCcgCGCg -3' miRNA: 3'- cuGUUGCu--CGCGCuaC--UCGUGuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21423 | 0.66 | 0.825615 |
Target: 5'- cGCAuuACGuGCGCaucaAUGGGCGgcCGUCGCg -3' miRNA: 3'- cUGU--UGCuCGCGc---UACUCGU--GUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 4614 | 0.66 | 0.825615 |
Target: 5'- cGGCAGCuucgaGGUGcCGuaauUGAGCGcCAUCGCg -3' miRNA: 3'- -CUGUUGc----UCGC-GCu---ACUCGU-GUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 31289 | 0.66 | 0.843973 |
Target: 5'- cGCGuCGAGCGCGucgacgcuAGCcuuCAUCGCa -3' miRNA: 3'- cUGUuGCUCGCGCuac-----UCGu--GUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 28802 | 0.66 | 0.806391 |
Target: 5'- cGCAucCGGGCGCGucacggugaccGUGAcGCGCA-CGCg -3' miRNA: 3'- cUGUu-GCUCGCGC-----------UACU-CGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 33153 | 0.66 | 0.806391 |
Target: 5'- aGCcAUGAGCGCGGc--GCcuuGCAUCGCg -3' miRNA: 3'- cUGuUGCUCGCGCUacuCG---UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 6521 | 0.66 | 0.810301 |
Target: 5'- aACAGCGAaagcggcgcgcauacGCGCGAa-AGCucGCAUCGCc -3' miRNA: 3'- cUGUUGCU---------------CGCGCUacUCG--UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 25698 | 0.66 | 0.816106 |
Target: 5'- cACGGCGAGCacgGCGgcGcGUACGuUCGCg -3' miRNA: 3'- cUGUUGCUCG---CGCuaCuCGUGU-AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 41512 | 0.66 | 0.816106 |
Target: 5'- cACGGCGAGCuCGAgaaaucgGAGCGCGUgucagGCg -3' miRNA: 3'- cUGUUGCUCGcGCUa------CUCGUGUAg----CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 22154 | 0.66 | 0.806391 |
Target: 5'- -uCGACG-GCGCGAcGcuCGCAUUGCg -3' miRNA: 3'- cuGUUGCuCGCGCUaCucGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 20130 | 0.66 | 0.806391 |
Target: 5'- uACGGCaAGCGCGAcgGuacGGC-CGUCGCg -3' miRNA: 3'- cUGUUGcUCGCGCUa-C---UCGuGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 36075 | 0.66 | 0.806391 |
Target: 5'- aGCGAUGuaccGGCGCaagcuUGAGCGCgccGUCGCg -3' miRNA: 3'- cUGUUGC----UCGCGcu---ACUCGUG---UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 41564 | 0.66 | 0.834907 |
Target: 5'- uGGCGGCGAugcgagcuuucGCGCGuAUGcGCGCcgcuuUCGCu -3' miRNA: 3'- -CUGUUGCU-----------CGCGC-UACuCGUGu----AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29065 | 0.66 | 0.834907 |
Target: 5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3' miRNA: 3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 20675 | 0.66 | 0.833988 |
Target: 5'- cGCAGuguuugcCGAGCGCGAcGcgacAGCAC-UCGCu -3' miRNA: 3'- cUGUU-------GCUCGCGCUaC----UCGUGuAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 9527 | 0.66 | 0.825615 |
Target: 5'- cGCcgUGAGCGCGucgGAcgGCaacGCGUCGCa -3' miRNA: 3'- cUGuuGCUCGCGCua-CU--CG---UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 47401 | 0.66 | 0.825615 |
Target: 5'- cACGGCGcuCGCGGgcgGcGGCACgAUCGCg -3' miRNA: 3'- cUGUUGCucGCGCUa--C-UCGUG-UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 18936 | 0.66 | 0.825615 |
Target: 5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3' miRNA: 3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 42825 | 0.66 | 0.806391 |
Target: 5'- --aAGCGAGaCGCcuGAUGAGCACGccccCGUa -3' miRNA: 3'- cugUUGCUC-GCG--CUACUCGUGUa---GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21245 | 0.66 | 0.806391 |
Target: 5'- -uCGACG-GCGCGGUGcGCGCcacguAUUGCc -3' miRNA: 3'- cuGUUGCuCGCGCUACuCGUG-----UAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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