Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 20675 | 0.66 | 0.833988 |
Target: 5'- cGCAGuguuugcCGAGCGCGAcGcgacAGCAC-UCGCu -3' miRNA: 3'- cUGUU-------GCUCGCGCUaC----UCGUGuAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21245 | 0.66 | 0.806391 |
Target: 5'- -uCGACG-GCGCGGUGcGCGCcacguAUUGCc -3' miRNA: 3'- cuGUUGCuCGCGCUACuCGUG-----UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 36075 | 0.66 | 0.806391 |
Target: 5'- aGCGAUGuaccGGCGCaagcuUGAGCGCgccGUCGCg -3' miRNA: 3'- cUGUUGC----UCGCGcu---ACUCGUG---UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 20130 | 0.66 | 0.806391 |
Target: 5'- uACGGCaAGCGCGAcgGuacGGC-CGUCGCg -3' miRNA: 3'- cUGUUGcUCGCGCUa-C---UCGuGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29065 | 0.66 | 0.834907 |
Target: 5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3' miRNA: 3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 41564 | 0.66 | 0.834907 |
Target: 5'- uGGCGGCGAugcgagcuuucGCGCGuAUGcGCGCcgcuuUCGCu -3' miRNA: 3'- -CUGUUGCU-----------CGCGC-UACuCGUGu----AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 3330 | 0.66 | 0.843973 |
Target: 5'- -uCAACGucuGCGCGccGccGGCGCcgCGCg -3' miRNA: 3'- cuGUUGCu--CGCGCuaC--UCGUGuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 18936 | 0.66 | 0.825615 |
Target: 5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3' miRNA: 3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21281 | 0.67 | 0.765706 |
Target: 5'- -uCGAUGAGgcaguCGCaugGAUGAGUugAUCGCg -3' miRNA: 3'- cuGUUGCUC-----GCG---CUACUCGugUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 33462 | 0.67 | 0.755138 |
Target: 5'- uGGCAACucggucAGCGUGAUcacGAGCccuuCGUCGCg -3' miRNA: 3'- -CUGUUGc-----UCGCGCUA---CUCGu---GUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 43472 | 0.67 | 0.796482 |
Target: 5'- -uCAGCGGGCGCGuuuggGAGUACGaacuacauaUCGa -3' miRNA: 3'- cuGUUGCUCGCGCua---CUCGUGU---------AGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 25556 | 0.67 | 0.776127 |
Target: 5'- uGAUcGCGAGCGCGAcGucGGCGuCcgCGCc -3' miRNA: 3'- -CUGuUGCUCGCGCUaC--UCGU-GuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24197 | 0.67 | 0.776127 |
Target: 5'- cGACGgucacgcucGCGGGCGCGcucacGAGCGCGcucaCGCu -3' miRNA: 3'- -CUGU---------UGCUCGCGCua---CUCGUGUa---GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 23447 | 0.67 | 0.780252 |
Target: 5'- -uCGGCGAuCGgGGUGAGUgcuaugucgguuacgACAUCGCg -3' miRNA: 3'- cuGUUGCUcGCgCUACUCG---------------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 17588 | 0.67 | 0.773017 |
Target: 5'- cGGCGGCGgccaaGGCGCGcagggcaucuuccaGUGGcGCGgGUCGCg -3' miRNA: 3'- -CUGUUGC-----UCGCGC--------------UACU-CGUgUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 7304 | 0.67 | 0.785371 |
Target: 5'- uGCGGCcaggucuGCGCGAUGcGCucgaucaGCAUCGCg -3' miRNA: 3'- cUGUUGcu-----CGCGCUACuCG-------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 16380 | 0.67 | 0.78639 |
Target: 5'- cGGCGGCG-GCcUGAUGAaGCuggccgGCAUCGCg -3' miRNA: 3'- -CUGUUGCuCGcGCUACU-CG------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 38901 | 0.67 | 0.776127 |
Target: 5'- cGGCAccgucACGAGCaagccggcgccGCGccGAGCucgACGUCGCg -3' miRNA: 3'- -CUGU-----UGCUCG-----------CGCuaCUCG---UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 13859 | 0.67 | 0.765706 |
Target: 5'- gGGCAGCu-GCGCGAgcAGCACAagCGUa -3' miRNA: 3'- -CUGUUGcuCGCGCUacUCGUGUa-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 26454 | 0.67 | 0.769893 |
Target: 5'- aGCAGCGcuugguGCGCGAgugccauacgccGCGCGUCGCc -3' miRNA: 3'- cUGUUGCu-----CGCGCUacu---------CGUGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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