miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 16350 0.69 0.644178
Target:  5'- cGACGagACGaAGCGCGcgGc-CGCGUCGCu -3'
miRNA:   3'- -CUGU--UGC-UCGCGCuaCucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 31117 0.69 0.644178
Target:  5'- cGACAcCcGGCGgGAUGAGCGaaaugaugaaGUCGCg -3'
miRNA:   3'- -CUGUuGcUCGCgCUACUCGUg---------UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 9603 0.69 0.632823
Target:  5'- uGCGGC-AGCGCGAUcauCGCGUCGCg -3'
miRNA:   3'- cUGUUGcUCGCGCUAcucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10881 0.7 0.5875
Target:  5'- cGGCAcCGGcGCGCGucGUGAGCGgcgUAUCGCc -3'
miRNA:   3'- -CUGUuGCU-CGCGC--UACUCGU---GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 30926 0.7 0.610122
Target:  5'- cGACGGCGuacGCGCGAgcuGCGCAUUcgGCu -3'
miRNA:   3'- -CUGUUGCu--CGCGCUacuCGUGUAG--CG- -5'
24302 5' -52.3 NC_005263.2 + 46831 0.7 0.621467
Target:  5'- cGCAACGcgcgccaggcGGCGCGccaagGAGCACGUCa- -3'
miRNA:   3'- cUGUUGC----------UCGCGCua---CUCGUGUAGcg -5'
24302 5' -52.3 NC_005263.2 + 37084 0.7 0.618062
Target:  5'- gGACAGC-AGCGCGAUc-GCACAcaugacggaggguuUCGCa -3'
miRNA:   3'- -CUGUUGcUCGCGCUAcuCGUGU--------------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 2798 0.7 0.576245
Target:  5'- gGGCugguCGAGUGCcAUGAGCACcgaguauUCGCa -3'
miRNA:   3'- -CUGuu--GCUCGCGcUACUCGUGu------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 6462 0.71 0.55389
Target:  5'- aGCAcgaGCGAGCGCG-UGGGcCGCAgUGCa -3'
miRNA:   3'- cUGU---UGCUCGCGCuACUC-GUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 47931 0.71 0.542808
Target:  5'- gGGCAGCGGGCuCGccccGGGCGCGgaUCGCg -3'
miRNA:   3'- -CUGUUGCUCGcGCua--CUCGUGU--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 26794 0.71 0.531799
Target:  5'- cGACGGCGuuCGUGAacccGCACGUCGCg -3'
miRNA:   3'- -CUGUUGCucGCGCUacu-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21634 0.71 0.531799
Target:  5'- uGCGGCGAcGCGCGgcGuauGGCAC-UCGCg -3'
miRNA:   3'- cUGUUGCU-CGCGCuaC---UCGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 46956 0.71 0.541703
Target:  5'- cGCGACGGGCGCacuacuuucGAGCggguugaGCAUCGCa -3'
miRNA:   3'- cUGUUGCUCGCGcua------CUCG-------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 24949 0.72 0.478118
Target:  5'- gGACGGCGGuGCGCGGUucGCAgAUCGg -3'
miRNA:   3'- -CUGUUGCU-CGCGCUAcuCGUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 763 0.72 0.510034
Target:  5'- cGGCGACGcgcAGCGCGAUGuacgacuGCGgGUCGa -3'
miRNA:   3'- -CUGUUGC---UCGCGCUACu------CGUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 23895 0.72 0.499292
Target:  5'- -uCAACG-GCGCGcUGAaccaggucgcGCGCAUCGCu -3'
miRNA:   3'- cuGUUGCuCGCGCuACU----------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 42913 0.72 0.499292
Target:  5'- gGAC-GCGAGUGCGc-GAGCAagaAUCGCu -3'
miRNA:   3'- -CUGuUGCUCGCGCuaCUCGUg--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47500 0.73 0.437164
Target:  5'- -cCAGcCGAuuGCGCGA--AGCACAUCGCg -3'
miRNA:   3'- cuGUU-GCU--CGCGCUacUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 1230 0.73 0.447216
Target:  5'- cGGgGACGAGCGCGAUGucauccGGC-CAggaugCGCg -3'
miRNA:   3'- -CUgUUGCUCGCGCUAC------UCGuGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 40765 0.73 0.450257
Target:  5'- cGGCGGCG-GCaagucgcuccugaacGCGAUgcugaucGAGCGCAUCGCg -3'
miRNA:   3'- -CUGUUGCuCG---------------CGCUA-------CUCGUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.