Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 40765 | 0.73 | 0.450257 |
Target: 5'- cGGCGGCG-GCaagucgcuccugaacGCGAUgcugaucGAGCGCAUCGCg -3' miRNA: 3'- -CUGUUGCuCG---------------CGCUA-------CUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29326 | 0.73 | 0.417457 |
Target: 5'- cGCGGCGAGCaCGAUaaccagcgcGAGCACcgCGCc -3' miRNA: 3'- cUGUUGCUCGcGCUA---------CUCGUGuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 33466 | 0.74 | 0.388936 |
Target: 5'- cGGCgGACGAGCGCGuAUG-GCugAUCGa -3' miRNA: 3'- -CUG-UUGCUCGCGC-UACuCGugUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 14056 | 0.74 | 0.379717 |
Target: 5'- cGCGuCGAGCGCauUGAGCGCGcCGCg -3' miRNA: 3'- cUGUuGCUCGCGcuACUCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 19102 | 0.75 | 0.344332 |
Target: 5'- cGCAACGcacugccggucGGcCGCGccGAGCGCAUCGCc -3' miRNA: 3'- cUGUUGC-----------UC-GCGCuaCUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 38538 | 0.75 | 0.325085 |
Target: 5'- gGGCAGCGAGCGCGccgccuggcaagccGcGAGCGCcgCGUc -3' miRNA: 3'- -CUGUUGCUCGCGC--------------UaCUCGUGuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 15495 | 0.75 | 0.319388 |
Target: 5'- cGACAuccGCGAGCucaagacgcucgGCGAUGuGCuCAUCGCg -3' miRNA: 3'- -CUGU---UGCUCG------------CGCUACuCGuGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 37810 | 0.75 | 0.319388 |
Target: 5'- uGACGACGGGCGCGcauccGGCGCucauGUCGCc -3' miRNA: 3'- -CUGUUGCUCGCGCuac--UCGUG----UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 38625 | 0.76 | 0.303526 |
Target: 5'- gGAUAGCGccGGCGCGaAUGaAGcCGCGUCGCg -3' miRNA: 3'- -CUGUUGC--UCGCGC-UAC-UC-GUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24684 | 0.76 | 0.31138 |
Target: 5'- aACAuCGAGCGC-AUGAGCGCGUUGa -3' miRNA: 3'- cUGUuGCUCGCGcUACUCGUGUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 6617 | 0.76 | 0.288276 |
Target: 5'- cGGCGGCGcgcucGGCGCGGUcGAGCA-GUCGCg -3' miRNA: 3'- -CUGUUGC-----UCGCGCUA-CUCGUgUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 15486 | 0.77 | 0.259597 |
Target: 5'- uGCGGCG-GCGCGGUGAGCAUca-GCa -3' miRNA: 3'- cUGUUGCuCGCGCUACUCGUGuagCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 30434 | 0.77 | 0.258911 |
Target: 5'- uGCGGuCGAGCGCGAgcagcgUGAGCGCGgcggccuUCGCg -3' miRNA: 3'- cUGUU-GCUCGCGCU------ACUCGUGU-------AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 23887 | 0.77 | 0.246151 |
Target: 5'- cGACAAgcgUGAGCGCGcucGUGAGCGCGccCGCg -3' miRNA: 3'- -CUGUU---GCUCGCGC---UACUCGUGUa-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29818 | 0.78 | 0.220996 |
Target: 5'- uGCGAUGcAGCGCGcacgacGAGCGCAUCGCc -3' miRNA: 3'- cUGUUGC-UCGCGCua----CUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21207 | 0.79 | 0.192665 |
Target: 5'- gGGCGAgUGGGUGCGuuucGAGCGCGUCGCa -3' miRNA: 3'- -CUGUU-GCUCGCGCua--CUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 10690 | 0.79 | 0.187395 |
Target: 5'- uGACGACGAggacggccGCGCGAcgcGAuGCACGUCGCg -3' miRNA: 3'- -CUGUUGCU--------CGCGCUa--CU-CGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 20180 | 0.81 | 0.137362 |
Target: 5'- cGACGACGAGCGCGccGGGCGacgCGCc -3' miRNA: 3'- -CUGUUGCUCGCGCuaCUCGUguaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 19871 | 0.81 | 0.149643 |
Target: 5'- cACGGCGAGCGCGgcGAGCGCGgccgaUGCa -3' miRNA: 3'- cUGUUGCUCGCGCuaCUCGUGUa----GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 37841 | 0.81 | 0.149643 |
Target: 5'- --aAGCG-GCGCGAUGcgaAGCGCAUCGCg -3' miRNA: 3'- cugUUGCuCGCGCUAC---UCGUGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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