Results 41 - 60 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 15186 | 0.69 | 0.689367 |
Target: 5'- cGAC-GCGAGCGCGccGcGCgACGUCGg -3' miRNA: 3'- -CUGuUGCUCGCGCuaCuCG-UGUAGCg -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 43588 | 0.69 | 0.671361 |
Target: 5'- uGACGAUGGGCuacgacgcggaagucGCGAUGGGcCAgAUCGg -3' miRNA: 3'- -CUGUUGCUCG---------------CGCUACUC-GUgUAGCg -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 35466 | 0.69 | 0.678128 |
Target: 5'- uGACAGCGGGCGCcGAaaccGA-CGuCGUCGCa -3' miRNA: 3'- -CUGUUGCUCGCG-CUa---CUcGU-GUAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 2092 | 0.69 | 0.640772 |
Target: 5'- cGGCAGCGAGUuguagGCGAgcaucgccucgaacUcGGCACGUUGCa -3' miRNA: 3'- -CUGUUGCUCG-----CGCU--------------AcUCGUGUAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 39098 | 0.69 | 0.632823 |
Target: 5'- gGACGGCGAguacGCGCGAcucGuGCGCcgUGCg -3' miRNA: 3'- -CUGUUGCU----CGCGCUa--CuCGUGuaGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 33677 | 0.69 | 0.632823 |
Target: 5'- ---uGCGGGCGCGAaucuUG-GCGCAgCGCg -3' miRNA: 3'- cuguUGCUCGCGCU----ACuCGUGUaGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 29283 | 0.69 | 0.665711 |
Target: 5'- cGGCAAUGAGCugcacgGCGGccgGGucggcauGCGCAUCGCg -3' miRNA: 3'- -CUGUUGCUCG------CGCUa--CU-------CGUGUAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 26078 | 0.69 | 0.689367 |
Target: 5'- uGGCGcACGuGCGCauaGAGCGCGUCGa -3' miRNA: 3'- -CUGU-UGCuCGCGcuaCUCGUGUAGCg -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 43178 | 0.69 | 0.686001 |
Target: 5'- aGACGcaguACG-GCGCGAUGuuuuggauggcgacGGCGCGcuaUCGCa -3' miRNA: 3'- -CUGU----UGCuCGCGCUAC--------------UCGUGU---AGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 959 | 0.69 | 0.666842 |
Target: 5'- cGGCGACGuAGCgGCGGUcgccuGCGCGUCGg -3' miRNA: 3'- -CUGUUGC-UCG-CGCUAcu---CGUGUAGCg -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 31117 | 0.69 | 0.644178 |
Target: 5'- cGACAcCcGGCGgGAUGAGCGaaaugaugaaGUCGCg -3' miRNA: 3'- -CUGUuGcUCGCgCUACUCGUg---------UAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 9603 | 0.69 | 0.632823 |
Target: 5'- uGCGGC-AGCGCGAUcauCGCGUCGCg -3' miRNA: 3'- cUGUUGcUCGCGCUAcucGUGUAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 16350 | 0.69 | 0.644178 |
Target: 5'- cGACGagACGaAGCGCGcgGc-CGCGUCGCu -3' miRNA: 3'- -CUGU--UGC-UCGCGCuaCucGUGUAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 26200 | 0.69 | 0.644178 |
Target: 5'- cGCGGCGGccGCGCGAUGcGGCgGCcguUCGCg -3' miRNA: 3'- cUGUUGCU--CGCGCUAC-UCG-UGu--AGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 10946 | 0.69 | 0.655522 |
Target: 5'- uGCGGggUGAGCGCuucGAGCACAccUCGCa -3' miRNA: 3'- cUGUU--GCUCGCGcuaCUCGUGU--AGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 10744 | 0.69 | 0.655522 |
Target: 5'- aGACu-CGAGCGCaucGAGCACGgcCGCg -3' miRNA: 3'- -CUGuuGCUCGCGcuaCUCGUGUa-GCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 20352 | 0.69 | 0.655522 |
Target: 5'- cGCAccucGgGGGCGCGcAUG-GCugAUCGCg -3' miRNA: 3'- cUGU----UgCUCGCGC-UACuCGugUAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 22537 | 0.69 | 0.666842 |
Target: 5'- --uGACGGGCgGCGcgGAcGCcgACGUCGCg -3' miRNA: 3'- cugUUGCUCG-CGCuaCU-CG--UGUAGCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 45167 | 0.69 | 0.644178 |
Target: 5'- -uCGGCG-GCgGCGAUG-GCGCAUuCGCg -3' miRNA: 3'- cuGUUGCuCG-CGCUACuCGUGUA-GCG- -5' |
|||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 37920 | 0.68 | 0.711657 |
Target: 5'- aACAGCGGGCGCa---GGCGCGcCGCc -3' miRNA: 3'- cUGUUGCUCGCGcuacUCGUGUaGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home