Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 25556 | 0.67 | 0.776127 |
Target: 5'- uGAUcGCGAGCGCGAcGucGGCGuCcgCGCc -3' miRNA: 3'- -CUGuUGCUCGCGCUaC--UCGU-GuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 692 | 0.67 | 0.780252 |
Target: 5'- -uCggUGAGCGCGAUcgugccgccgcccgcGAGCGcCGUgGCg -3' miRNA: 3'- cuGuuGCUCGCGCUA---------------CUCGU-GUAgCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 47446 | 0.67 | 0.78639 |
Target: 5'- uACGAUGAgGCGUucGAucUGgccGGCACGUCGCg -3' miRNA: 3'- cUGUUGCU-CGCG--CU--AC---UCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24197 | 0.67 | 0.776127 |
Target: 5'- cGACGgucacgcucGCGGGCGCGcucacGAGCGCGcucaCGCu -3' miRNA: 3'- -CUGU---------UGCUCGCGCua---CUCGUGUa---GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 23447 | 0.67 | 0.780252 |
Target: 5'- -uCGGCGAuCGgGGUGAGUgcuaugucgguuacgACAUCGCg -3' miRNA: 3'- cuGUUGCUcGCgCUACUCG---------------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 38387 | 0.67 | 0.776127 |
Target: 5'- uGGCgAACGAGCGCa---AGCGCGcCGCa -3' miRNA: 3'- -CUG-UUGCUCGCGcuacUCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 16380 | 0.67 | 0.78639 |
Target: 5'- cGGCGGCG-GCcUGAUGAaGCuggccgGCAUCGCg -3' miRNA: 3'- -CUGUUGCuCGcGCUACU-CG------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29972 | 0.67 | 0.776127 |
Target: 5'- aGCGGCGggcAGCGCGAUcAGCGCGUa-- -3' miRNA: 3'- cUGUUGC---UCGCGCUAcUCGUGUAgcg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 25188 | 0.67 | 0.776127 |
Target: 5'- --gGACGGGCGCGcagcuUGGGCACcucCGUc -3' miRNA: 3'- cugUUGCUCGCGCu----ACUCGUGua-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 17588 | 0.67 | 0.773017 |
Target: 5'- cGGCGGCGgccaaGGCGCGcagggcaucuuccaGUGGcGCGgGUCGCg -3' miRNA: 3'- -CUGUUGC-----UCGCGC--------------UACU-CGUgUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21281 | 0.67 | 0.765706 |
Target: 5'- -uCGAUGAGgcaguCGCaugGAUGAGUugAUCGCg -3' miRNA: 3'- cuGUUGCUC-----GCG---CUACUCGugUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21371 | 0.67 | 0.78639 |
Target: 5'- cGCAACucGaCGUGAUGGuGCGCuUCGCg -3' miRNA: 3'- cUGUUGcuC-GCGCUACU-CGUGuAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 38901 | 0.67 | 0.776127 |
Target: 5'- cGGCAccgucACGAGCaagccggcgccGCGccGAGCucgACGUCGCg -3' miRNA: 3'- -CUGU-----UGCUCG-----------CGCuaCUCG---UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 36075 | 0.66 | 0.806391 |
Target: 5'- aGCGAUGuaccGGCGCaagcuUGAGCGCgccGUCGCg -3' miRNA: 3'- cUGUUGC----UCGCGcu---ACUCGUG---UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29065 | 0.66 | 0.834907 |
Target: 5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3' miRNA: 3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 20130 | 0.66 | 0.806391 |
Target: 5'- uACGGCaAGCGCGAcgGuacGGC-CGUCGCg -3' miRNA: 3'- cUGUUGcUCGCGCUa-C---UCGuGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 9527 | 0.66 | 0.825615 |
Target: 5'- cGCcgUGAGCGCGucgGAcgGCaacGCGUCGCa -3' miRNA: 3'- cUGuuGCUCGCGCua-CU--CG---UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 47401 | 0.66 | 0.825615 |
Target: 5'- cACGGCGcuCGCGGgcgGcGGCACgAUCGCg -3' miRNA: 3'- cUGUUGCucGCGCUa--C-UCGUG-UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 18936 | 0.66 | 0.825615 |
Target: 5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3' miRNA: 3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 31289 | 0.66 | 0.843973 |
Target: 5'- cGCGuCGAGCGCGucgacgcuAGCcuuCAUCGCa -3' miRNA: 3'- cUGUuGCUCGCGCuac-----UCGu--GUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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