miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 32584 1.11 0.001233
Target:  5'- gGACAACGAGCGCGAUGAGCACAUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCUACUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20180 0.81 0.137362
Target:  5'- cGACGACGAGCGCGccGGGCGacgCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuaCUCGUguaGCG- -5'
24302 5' -52.3 NC_005263.2 + 37841 0.81 0.149643
Target:  5'- --aAGCG-GCGCGAUGcgaAGCGCAUCGCg -3'
miRNA:   3'- cugUUGCuCGCGCUAC---UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 19871 0.81 0.149643
Target:  5'- cACGGCGAGCGCGgcGAGCGCGgccgaUGCa -3'
miRNA:   3'- cUGUUGCUCGCGCuaCUCGUGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 10690 0.79 0.187395
Target:  5'- uGACGACGAggacggccGCGCGAcgcGAuGCACGUCGCg -3'
miRNA:   3'- -CUGUUGCU--------CGCGCUa--CU-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21207 0.79 0.192665
Target:  5'- gGGCGAgUGGGUGCGuuucGAGCGCGUCGCa -3'
miRNA:   3'- -CUGUU-GCUCGCGCua--CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 29818 0.78 0.220996
Target:  5'- uGCGAUGcAGCGCGcacgacGAGCGCAUCGCc -3'
miRNA:   3'- cUGUUGC-UCGCGCua----CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 23887 0.77 0.246151
Target:  5'- cGACAAgcgUGAGCGCGcucGUGAGCGCGccCGCg -3'
miRNA:   3'- -CUGUU---GCUCGCGC---UACUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 30434 0.77 0.258911
Target:  5'- uGCGGuCGAGCGCGAgcagcgUGAGCGCGgcggccuUCGCg -3'
miRNA:   3'- cUGUU-GCUCGCGCU------ACUCGUGU-------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 15486 0.77 0.259597
Target:  5'- uGCGGCG-GCGCGGUGAGCAUca-GCa -3'
miRNA:   3'- cUGUUGCuCGCGCUACUCGUGuagCG- -5'
24302 5' -52.3 NC_005263.2 + 6617 0.76 0.288276
Target:  5'- cGGCGGCGcgcucGGCGCGGUcGAGCA-GUCGCg -3'
miRNA:   3'- -CUGUUGC-----UCGCGCUA-CUCGUgUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38625 0.76 0.303526
Target:  5'- gGAUAGCGccGGCGCGaAUGaAGcCGCGUCGCg -3'
miRNA:   3'- -CUGUUGC--UCGCGC-UAC-UC-GUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 24684 0.76 0.31138
Target:  5'- aACAuCGAGCGC-AUGAGCGCGUUGa -3'
miRNA:   3'- cUGUuGCUCGCGcUACUCGUGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 15495 0.75 0.319388
Target:  5'- cGACAuccGCGAGCucaagacgcucgGCGAUGuGCuCAUCGCg -3'
miRNA:   3'- -CUGU---UGCUCG------------CGCUACuCGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 37810 0.75 0.319388
Target:  5'- uGACGACGGGCGCGcauccGGCGCucauGUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuac--UCGUG----UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38538 0.75 0.325085
Target:  5'- gGGCAGCGAGCGCGccgccuggcaagccGcGAGCGCcgCGUc -3'
miRNA:   3'- -CUGUUGCUCGCGC--------------UaCUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 19102 0.75 0.344332
Target:  5'- cGCAACGcacugccggucGGcCGCGccGAGCGCAUCGCc -3'
miRNA:   3'- cUGUUGC-----------UC-GCGCuaCUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 14056 0.74 0.379717
Target:  5'- cGCGuCGAGCGCauUGAGCGCGcCGCg -3'
miRNA:   3'- cUGUuGCUCGCGcuACUCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 33466 0.74 0.388936
Target:  5'- cGGCgGACGAGCGCGuAUG-GCugAUCGa -3'
miRNA:   3'- -CUG-UUGCUCGCGC-UACuCGugUAGCg -5'
24302 5' -52.3 NC_005263.2 + 32099 0.73 0.407808
Target:  5'- cGGCGGCGucGGUGCGAUcGAGCGCuUCGa -3'
miRNA:   3'- -CUGUUGC--UCGCGCUA-CUCGUGuAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.