miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 39098 0.69 0.632823
Target:  5'- gGACGGCGAguacGCGCGAcucGuGCGCcgUGCg -3'
miRNA:   3'- -CUGUUGCU----CGCGCUa--CuCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 2092 0.69 0.640772
Target:  5'- cGGCAGCGAGUuguagGCGAgcaucgccucgaacUcGGCACGUUGCa -3'
miRNA:   3'- -CUGUUGCUCG-----CGCU--------------AcUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 45167 0.69 0.644178
Target:  5'- -uCGGCG-GCgGCGAUG-GCGCAUuCGCg -3'
miRNA:   3'- cuGUUGCuCG-CGCUACuCGUGUA-GCG- -5'
24302 5' -52.3 NC_005263.2 + 16350 0.69 0.644178
Target:  5'- cGACGagACGaAGCGCGcgGc-CGCGUCGCu -3'
miRNA:   3'- -CUGU--UGC-UCGCGCuaCucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 31117 0.69 0.644178
Target:  5'- cGACAcCcGGCGgGAUGAGCGaaaugaugaaGUCGCg -3'
miRNA:   3'- -CUGUuGcUCGCgCUACUCGUg---------UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 45473 0.69 0.644178
Target:  5'- -cCGGCaAGCGCGAUGAaccGCGCggucggccuGUCGCg -3'
miRNA:   3'- cuGUUGcUCGCGCUACU---CGUG---------UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 26200 0.69 0.644178
Target:  5'- cGCGGCGGccGCGCGAUGcGGCgGCcguUCGCg -3'
miRNA:   3'- cUGUUGCU--CGCGCUAC-UCG-UGu--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 10946 0.69 0.655522
Target:  5'- uGCGGggUGAGCGCuucGAGCACAccUCGCa -3'
miRNA:   3'- cUGUU--GCUCGCGcuaCUCGUGU--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 20352 0.69 0.655522
Target:  5'- cGCAccucGgGGGCGCGcAUG-GCugAUCGCg -3'
miRNA:   3'- cUGU----UgCUCGCGC-UACuCGugUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10744 0.69 0.655522
Target:  5'- aGACu-CGAGCGCaucGAGCACGgcCGCg -3'
miRNA:   3'- -CUGuuGCUCGCGcuaCUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 29283 0.69 0.665711
Target:  5'- cGGCAAUGAGCugcacgGCGGccgGGucggcauGCGCAUCGCg -3'
miRNA:   3'- -CUGUUGCUCG------CGCUa--CU-------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 22537 0.69 0.666842
Target:  5'- --uGACGGGCgGCGcgGAcGCcgACGUCGCg -3'
miRNA:   3'- cugUUGCUCG-CGCuaCU-CG--UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 959 0.69 0.666842
Target:  5'- cGGCGACGuAGCgGCGGUcgccuGCGCGUCGg -3'
miRNA:   3'- -CUGUUGC-UCG-CGCUAcu---CGUGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 43588 0.69 0.671361
Target:  5'- uGACGAUGGGCuacgacgcggaagucGCGAUGGGcCAgAUCGg -3'
miRNA:   3'- -CUGUUGCUCG---------------CGCUACUC-GUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 35466 0.69 0.678128
Target:  5'- uGACAGCGGGCGCcGAaaccGA-CGuCGUCGCa -3'
miRNA:   3'- -CUGUUGCUCGCG-CUa---CUcGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 43178 0.69 0.686001
Target:  5'- aGACGcaguACG-GCGCGAUGuuuuggauggcgacGGCGCGcuaUCGCa -3'
miRNA:   3'- -CUGU----UGCuCGCGCUAC--------------UCGUGU---AGCG- -5'
24302 5' -52.3 NC_005263.2 + 15186 0.69 0.689367
Target:  5'- cGAC-GCGAGCGCGccGcGCgACGUCGg -3'
miRNA:   3'- -CUGuUGCUCGCGCuaCuCG-UGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 39694 0.69 0.689367
Target:  5'- cGAUggGGCGAGCGCGAgcUGgaaauggccGGCGCGggcCGCg -3'
miRNA:   3'- -CUG--UUGCUCGCGCU--AC---------UCGUGUa--GCG- -5'
24302 5' -52.3 NC_005263.2 + 26078 0.69 0.689367
Target:  5'- uGGCGcACGuGCGCauaGAGCGCGUCGa -3'
miRNA:   3'- -CUGU-UGCuCGCGcuaCUCGUGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 7027 0.68 0.700547
Target:  5'- uGCAuguCGcGCGCcgacgGAUG-GCGCAUCGCg -3'
miRNA:   3'- cUGUu--GCuCGCG-----CUACuCGUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.