miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 6521 0.66 0.810301
Target:  5'- aACAGCGAaagcggcgcgcauacGCGCGAa-AGCucGCAUCGCc -3'
miRNA:   3'- cUGUUGCU---------------CGCGCUacUCG--UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 33153 0.66 0.806391
Target:  5'- aGCcAUGAGCGCGGc--GCcuuGCAUCGCg -3'
miRNA:   3'- cUGuUGCUCGCGCUacuCG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 42825 0.66 0.806391
Target:  5'- --aAGCGAGaCGCcuGAUGAGCACGccccCGUa -3'
miRNA:   3'- cugUUGCUC-GCG--CUACUCGUGUa---GCG- -5'
24302 5' -52.3 NC_005263.2 + 28802 0.66 0.806391
Target:  5'- cGCAucCGGGCGCGucacggugaccGUGAcGCGCA-CGCg -3'
miRNA:   3'- cUGUu-GCUCGCGC-----------UACU-CGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 22154 0.66 0.806391
Target:  5'- -uCGACG-GCGCGAcGcuCGCAUUGCg -3'
miRNA:   3'- cuGUUGCuCGCGCUaCucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21245 0.66 0.806391
Target:  5'- -uCGACG-GCGCGGUGcGCGCcacguAUUGCc -3'
miRNA:   3'- cuGUUGCuCGCGCUACuCGUG-----UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 36075 0.66 0.806391
Target:  5'- aGCGAUGuaccGGCGCaagcuUGAGCGCgccGUCGCg -3'
miRNA:   3'- cUGUUGC----UCGCGcu---ACUCGUG---UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20130 0.66 0.806391
Target:  5'- uACGGCaAGCGCGAcgGuacGGC-CGUCGCg -3'
miRNA:   3'- cUGUUGcUCGCGCUa-C---UCGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 43472 0.67 0.796482
Target:  5'- -uCAGCGGGCGCGuuuggGAGUACGaacuacauaUCGa -3'
miRNA:   3'- cuGUUGCUCGCGCua---CUCGUGU---------AGCg -5'
24302 5' -52.3 NC_005263.2 + 29240 0.67 0.796482
Target:  5'- cGCAGCG-GCGCGccGAgGCACG-CGUu -3'
miRNA:   3'- cUGUUGCuCGCGCuaCU-CGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 16380 0.67 0.78639
Target:  5'- cGGCGGCG-GCcUGAUGAaGCuggccgGCAUCGCg -3'
miRNA:   3'- -CUGUUGCuCGcGCUACU-CG------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21371 0.67 0.78639
Target:  5'- cGCAACucGaCGUGAUGGuGCGCuUCGCg -3'
miRNA:   3'- cUGUUGcuC-GCGCUACU-CGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47446 0.67 0.78639
Target:  5'- uACGAUGAgGCGUucGAucUGgccGGCACGUCGCg -3'
miRNA:   3'- cUGUUGCU-CGCG--CU--AC---UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7304 0.67 0.785371
Target:  5'- uGCGGCcaggucuGCGCGAUGcGCucgaucaGCAUCGCg -3'
miRNA:   3'- cUGUUGcu-----CGCGCUACuCG-------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 692 0.67 0.780252
Target:  5'- -uCggUGAGCGCGAUcgugccgccgcccgcGAGCGcCGUgGCg -3'
miRNA:   3'- cuGuuGCUCGCGCUA---------------CUCGU-GUAgCG- -5'
24302 5' -52.3 NC_005263.2 + 23447 0.67 0.780252
Target:  5'- -uCGGCGAuCGgGGUGAGUgcuaugucgguuacgACAUCGCg -3'
miRNA:   3'- cuGUUGCUcGCgCUACUCG---------------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 29972 0.67 0.776127
Target:  5'- aGCGGCGggcAGCGCGAUcAGCGCGUa-- -3'
miRNA:   3'- cUGUUGC---UCGCGCUAcUCGUGUAgcg -5'
24302 5' -52.3 NC_005263.2 + 24197 0.67 0.776127
Target:  5'- cGACGgucacgcucGCGGGCGCGcucacGAGCGCGcucaCGCu -3'
miRNA:   3'- -CUGU---------UGCUCGCGCua---CUCGUGUa---GCG- -5'
24302 5' -52.3 NC_005263.2 + 38901 0.67 0.776127
Target:  5'- cGGCAccgucACGAGCaagccggcgccGCGccGAGCucgACGUCGCg -3'
miRNA:   3'- -CUGU-----UGCUCG-----------CGCuaCUCG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 25556 0.67 0.776127
Target:  5'- uGAUcGCGAGCGCGAcGucGGCGuCcgCGCc -3'
miRNA:   3'- -CUGuUGCUCGCGCUaC--UCGU-GuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.