miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 29972 0.67 0.776127
Target:  5'- aGCGGCGggcAGCGCGAUcAGCGCGUa-- -3'
miRNA:   3'- cUGUUGC---UCGCGCUAcUCGUGUAgcg -5'
24302 5' -52.3 NC_005263.2 + 38387 0.67 0.776127
Target:  5'- uGGCgAACGAGCGCa---AGCGCGcCGCa -3'
miRNA:   3'- -CUG-UUGCUCGCGcuacUCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 17588 0.67 0.773017
Target:  5'- cGGCGGCGgccaaGGCGCGcagggcaucuuccaGUGGcGCGgGUCGCg -3'
miRNA:   3'- -CUGUUGC-----UCGCGC--------------UACU-CGUgUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 26454 0.67 0.769893
Target:  5'- aGCAGCGcuugguGCGCGAgugccauacgccGCGCGUCGCc -3'
miRNA:   3'- cUGUUGCu-----CGCGCUacu---------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 13859 0.67 0.765706
Target:  5'- gGGCAGCu-GCGCGAgcAGCACAagCGUa -3'
miRNA:   3'- -CUGUUGcuCGCGCUacUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 21281 0.67 0.765706
Target:  5'- -uCGAUGAGgcaguCGCaugGAUGAGUugAUCGCg -3'
miRNA:   3'- cuGUUGCUC-----GCG---CUACUCGugUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 12069 0.67 0.755138
Target:  5'- cGACcgaGACGGGCGCGAguaccuuGU-CGUCGCg -3'
miRNA:   3'- -CUG---UUGCUCGCGCUacu----CGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38786 0.67 0.755138
Target:  5'- uGACGAUGGaaGCGGccacGAGCGgCAUCGCu -3'
miRNA:   3'- -CUGUUGCUcgCGCUa---CUCGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 33462 0.67 0.755138
Target:  5'- uGGCAACucggucAGCGUGAUcacGAGCccuuCGUCGCg -3'
miRNA:   3'- -CUGUUGc-----UCGCGCUA---CUCGu---GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 36682 0.68 0.744437
Target:  5'- uGGCAGCauucGAGCGCGGgcaagGAGC-CG-CGCc -3'
miRNA:   3'- -CUGUUG----CUCGCGCUa----CUCGuGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 21165 0.68 0.744437
Target:  5'- cGGCAGCGAcgucaucaacguGCGUGgcGAGCuguuccgcauccGCGUUGCa -3'
miRNA:   3'- -CUGUUGCU------------CGCGCuaCUCG------------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 40447 0.68 0.744437
Target:  5'- uACAGCGGGCGUGu---GCGCGaUGCg -3'
miRNA:   3'- cUGUUGCUCGCGCuacuCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 33389 0.68 0.741202
Target:  5'- cGGCAAUGccacuauccggaucGGCGuCGAucgccuUGAGCGCcgCGCg -3'
miRNA:   3'- -CUGUUGC--------------UCGC-GCU------ACUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 387 0.68 0.733614
Target:  5'- cGACAGaauugcCGAGCGCGuaGAGCGCA-CGa -3'
miRNA:   3'- -CUGUU------GCUCGCGCuaCUCGUGUaGCg -5'
24302 5' -52.3 NC_005263.2 + 12019 0.68 0.733614
Target:  5'- cGCGACG-GCGCGcucaagcuUGcgccGGUACAUCGCu -3'
miRNA:   3'- cUGUUGCuCGCGCu-------AC----UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 42122 0.68 0.733614
Target:  5'- gGAUAGCGucgugcuGCGCGAcGAgGCGUGUCGCg -3'
miRNA:   3'- -CUGUUGCu------CGCGCUaCU-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 6502 0.68 0.733614
Target:  5'- cGACgAACG-GCGCGuUGAaGCcggucgugaGCAUCGCg -3'
miRNA:   3'- -CUG-UUGCuCGCGCuACU-CG---------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10287 0.68 0.722684
Target:  5'- cGGCGACauGAGCGCcgGAUGcGCGCccGUCGUc -3'
miRNA:   3'- -CUGUUG--CUCGCG--CUACuCGUG--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7513 0.68 0.711657
Target:  5'- uGACGGCGAgGUGCGuacaGGGCGgAUgGCa -3'
miRNA:   3'- -CUGUUGCU-CGCGCua--CUCGUgUAgCG- -5'
24302 5' -52.3 NC_005263.2 + 37920 0.68 0.711657
Target:  5'- aACAGCGGGCGCa---GGCGCGcCGCc -3'
miRNA:   3'- cUGUUGCUCGCGcuacUCGUGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.