Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 39098 | 0.69 | 0.632823 |
Target: 5'- gGACGGCGAguacGCGCGAcucGuGCGCcgUGCg -3' miRNA: 3'- -CUGUUGCU----CGCGCUa--CuCGUGuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 33677 | 0.69 | 0.632823 |
Target: 5'- ---uGCGGGCGCGAaucuUG-GCGCAgCGCg -3' miRNA: 3'- cuguUGCUCGCGCU----ACuCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 9603 | 0.69 | 0.632823 |
Target: 5'- uGCGGC-AGCGCGAUcauCGCGUCGCg -3' miRNA: 3'- cUGUUGcUCGCGCUAcucGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 46831 | 0.7 | 0.621467 |
Target: 5'- cGCAACGcgcgccaggcGGCGCGccaagGAGCACGUCa- -3' miRNA: 3'- cUGUUGC----------UCGCGCua---CUCGUGUAGcg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 37084 | 0.7 | 0.618062 |
Target: 5'- gGACAGC-AGCGCGAUc-GCACAcaugacggaggguuUCGCa -3' miRNA: 3'- -CUGUUGcUCGCGCUAcuCGUGU--------------AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 30926 | 0.7 | 0.610122 |
Target: 5'- cGACGGCGuacGCGCGAgcuGCGCAUUcgGCu -3' miRNA: 3'- -CUGUUGCu--CGCGCUacuCGUGUAG--CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 10881 | 0.7 | 0.5875 |
Target: 5'- cGGCAcCGGcGCGCGucGUGAGCGgcgUAUCGCc -3' miRNA: 3'- -CUGUuGCU-CGCGC--UACUCGU---GUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 2798 | 0.7 | 0.576245 |
Target: 5'- gGGCugguCGAGUGCcAUGAGCACcgaguauUCGCa -3' miRNA: 3'- -CUGuu--GCUCGCGcUACUCGUGu------AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 6462 | 0.71 | 0.55389 |
Target: 5'- aGCAcgaGCGAGCGCG-UGGGcCGCAgUGCa -3' miRNA: 3'- cUGU---UGCUCGCGCuACUC-GUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 47931 | 0.71 | 0.542808 |
Target: 5'- gGGCAGCGGGCuCGccccGGGCGCGgaUCGCg -3' miRNA: 3'- -CUGUUGCUCGcGCua--CUCGUGU--AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 46956 | 0.71 | 0.541703 |
Target: 5'- cGCGACGGGCGCacuacuuucGAGCggguugaGCAUCGCa -3' miRNA: 3'- cUGUUGCUCGCGcua------CUCG-------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 26794 | 0.71 | 0.531799 |
Target: 5'- cGACGGCGuuCGUGAacccGCACGUCGCg -3' miRNA: 3'- -CUGUUGCucGCGCUacu-CGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21634 | 0.71 | 0.531799 |
Target: 5'- uGCGGCGAcGCGCGgcGuauGGCAC-UCGCg -3' miRNA: 3'- cUGUUGCU-CGCGCuaC---UCGUGuAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 763 | 0.72 | 0.510034 |
Target: 5'- cGGCGACGcgcAGCGCGAUGuacgacuGCGgGUCGa -3' miRNA: 3'- -CUGUUGC---UCGCGCUACu------CGUgUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 23895 | 0.72 | 0.499292 |
Target: 5'- -uCAACG-GCGCGcUGAaccaggucgcGCGCAUCGCu -3' miRNA: 3'- cuGUUGCuCGCGCuACU----------CGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 42913 | 0.72 | 0.499292 |
Target: 5'- gGAC-GCGAGUGCGc-GAGCAagaAUCGCu -3' miRNA: 3'- -CUGuUGCUCGCGCuaCUCGUg--UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24949 | 0.72 | 0.478118 |
Target: 5'- gGACGGCGGuGCGCGGUucGCAgAUCGg -3' miRNA: 3'- -CUGUUGCU-CGCGCUAcuCGUgUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 40765 | 0.73 | 0.450257 |
Target: 5'- cGGCGGCG-GCaagucgcuccugaacGCGAUgcugaucGAGCGCAUCGCg -3' miRNA: 3'- -CUGUUGCuCG---------------CGCUA-------CUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 1230 | 0.73 | 0.447216 |
Target: 5'- cGGgGACGAGCGCGAUGucauccGGC-CAggaugCGCg -3' miRNA: 3'- -CUgUUGCUCGCGCUAC------UCGuGUa----GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 47500 | 0.73 | 0.437164 |
Target: 5'- -cCAGcCGAuuGCGCGA--AGCACAUCGCg -3' miRNA: 3'- cuGUU-GCU--CGCGCUacUCGUGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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