miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 387 0.68 0.733614
Target:  5'- cGACAGaauugcCGAGCGCGuaGAGCGCA-CGa -3'
miRNA:   3'- -CUGUU------GCUCGCGCuaCUCGUGUaGCg -5'
24302 5' -52.3 NC_005263.2 + 692 0.67 0.780252
Target:  5'- -uCggUGAGCGCGAUcgugccgccgcccgcGAGCGcCGUgGCg -3'
miRNA:   3'- cuGuuGCUCGCGCUA---------------CUCGU-GUAgCG- -5'
24302 5' -52.3 NC_005263.2 + 763 0.72 0.510034
Target:  5'- cGGCGACGcgcAGCGCGAUGuacgacuGCGgGUCGa -3'
miRNA:   3'- -CUGUUGC---UCGCGCUACu------CGUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 959 0.69 0.666842
Target:  5'- cGGCGACGuAGCgGCGGUcgccuGCGCGUCGg -3'
miRNA:   3'- -CUGUUGC-UCG-CGCUAcu---CGUGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 1230 0.73 0.447216
Target:  5'- cGGgGACGAGCGCGAUGucauccGGC-CAggaugCGCg -3'
miRNA:   3'- -CUgUUGCUCGCGCUAC------UCGuGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 2092 0.69 0.640772
Target:  5'- cGGCAGCGAGUuguagGCGAgcaucgccucgaacUcGGCACGUUGCa -3'
miRNA:   3'- -CUGUUGCUCG-----CGCU--------------AcUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 2798 0.7 0.576245
Target:  5'- gGGCugguCGAGUGCcAUGAGCACcgaguauUCGCa -3'
miRNA:   3'- -CUGuu--GCUCGCGcUACUCGUGu------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 3330 0.66 0.843973
Target:  5'- -uCAACGucuGCGCGccGccGGCGCcgCGCg -3'
miRNA:   3'- cuGUUGCu--CGCGCuaC--UCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 4614 0.66 0.825615
Target:  5'- cGGCAGCuucgaGGUGcCGuaauUGAGCGcCAUCGCg -3'
miRNA:   3'- -CUGUUGc----UCGC-GCu---ACUCGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 6462 0.71 0.55389
Target:  5'- aGCAcgaGCGAGCGCG-UGGGcCGCAgUGCa -3'
miRNA:   3'- cUGU---UGCUCGCGCuACUC-GUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 6502 0.68 0.733614
Target:  5'- cGACgAACG-GCGCGuUGAaGCcggucgugaGCAUCGCg -3'
miRNA:   3'- -CUG-UUGCuCGCGCuACU-CG---------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 6521 0.66 0.810301
Target:  5'- aACAGCGAaagcggcgcgcauacGCGCGAa-AGCucGCAUCGCc -3'
miRNA:   3'- cUGUUGCU---------------CGCGCUacUCG--UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 6617 0.76 0.288276
Target:  5'- cGGCGGCGcgcucGGCGCGGUcGAGCA-GUCGCg -3'
miRNA:   3'- -CUGUUGC-----UCGCGCUA-CUCGUgUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7027 0.68 0.700547
Target:  5'- uGCAuguCGcGCGCcgacgGAUG-GCGCAUCGCg -3'
miRNA:   3'- cUGUu--GCuCGCG-----CUACuCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7226 0.66 0.825615
Target:  5'- aGGCGACG-GCGCcAUGcGGUGCA-CGCg -3'
miRNA:   3'- -CUGUUGCuCGCGcUAC-UCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 7304 0.67 0.785371
Target:  5'- uGCGGCcaggucuGCGCGAUGcGCucgaucaGCAUCGCg -3'
miRNA:   3'- cUGUUGcu-----CGCGCUACuCG-------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7513 0.68 0.711657
Target:  5'- uGACGGCGAgGUGCGuacaGGGCGgAUgGCa -3'
miRNA:   3'- -CUGUUGCU-CGCGCua--CUCGUgUAgCG- -5'
24302 5' -52.3 NC_005263.2 + 8853 0.66 0.825615
Target:  5'- --aGGCG-GCGCGcgGGGCGCGagcccCGCu -3'
miRNA:   3'- cugUUGCuCGCGCuaCUCGUGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 9527 0.66 0.825615
Target:  5'- cGCcgUGAGCGCGucgGAcgGCaacGCGUCGCa -3'
miRNA:   3'- cUGuuGCUCGCGCua-CU--CG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 9603 0.69 0.632823
Target:  5'- uGCGGC-AGCGCGAUcauCGCGUCGCg -3'
miRNA:   3'- cUGUUGcUCGCGCUAcucGUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.