miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 9613 0.66 0.843973
Target:  5'- cGACGcCGAucUGCG-UGAGCGCcUCGCg -3'
miRNA:   3'- -CUGUuGCUc-GCGCuACUCGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10287 0.68 0.722684
Target:  5'- cGGCGACauGAGCGCcgGAUGcGCGCccGUCGUc -3'
miRNA:   3'- -CUGUUG--CUCGCG--CUACuCGUG--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10690 0.79 0.187395
Target:  5'- uGACGACGAggacggccGCGCGAcgcGAuGCACGUCGCg -3'
miRNA:   3'- -CUGUUGCU--------CGCGCUa--CU-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10744 0.69 0.655522
Target:  5'- aGACu-CGAGCGCaucGAGCACGgcCGCg -3'
miRNA:   3'- -CUGuuGCUCGCGcuaCUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 10881 0.7 0.5875
Target:  5'- cGGCAcCGGcGCGCGucGUGAGCGgcgUAUCGCc -3'
miRNA:   3'- -CUGUuGCU-CGCGC--UACUCGU---GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10946 0.69 0.655522
Target:  5'- uGCGGggUGAGCGCuucGAGCACAccUCGCa -3'
miRNA:   3'- cUGUU--GCUCGCGcuaCUCGUGU--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 11888 0.68 0.700547
Target:  5'- uGACGACGcGGCGCc--GGGCGCcugCGCg -3'
miRNA:   3'- -CUGUUGC-UCGCGcuaCUCGUGua-GCG- -5'
24302 5' -52.3 NC_005263.2 + 12019 0.68 0.733614
Target:  5'- cGCGACG-GCGCGcucaagcuUGcgccGGUACAUCGCu -3'
miRNA:   3'- cUGUUGCuCGCGCu-------AC----UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 12069 0.67 0.755138
Target:  5'- cGACcgaGACGGGCGCGAguaccuuGU-CGUCGCg -3'
miRNA:   3'- -CUG---UUGCUCGCGCUacu----CGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 13394 0.66 0.816106
Target:  5'- gGAC-ACGAuCGUG-UGcaGGCGCGUCGCa -3'
miRNA:   3'- -CUGuUGCUcGCGCuAC--UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 13859 0.67 0.765706
Target:  5'- gGGCAGCu-GCGCGAgcAGCACAagCGUa -3'
miRNA:   3'- -CUGUUGcuCGCGCUacUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 14056 0.74 0.379717
Target:  5'- cGCGuCGAGCGCauUGAGCGCGcCGCg -3'
miRNA:   3'- cUGUuGCUCGCGcuACUCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 14366 0.66 0.834907
Target:  5'- uGACGACGGGCcCGAUGccgGGC-CGcUCGUc -3'
miRNA:   3'- -CUGUUGCUCGcGCUAC---UCGuGU-AGCG- -5'
24302 5' -52.3 NC_005263.2 + 15186 0.69 0.689367
Target:  5'- cGAC-GCGAGCGCGccGcGCgACGUCGg -3'
miRNA:   3'- -CUGuUGCUCGCGCuaCuCG-UGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 15486 0.77 0.259597
Target:  5'- uGCGGCG-GCGCGGUGAGCAUca-GCa -3'
miRNA:   3'- cUGUUGCuCGCGCUACUCGUGuagCG- -5'
24302 5' -52.3 NC_005263.2 + 15495 0.75 0.319388
Target:  5'- cGACAuccGCGAGCucaagacgcucgGCGAUGuGCuCAUCGCg -3'
miRNA:   3'- -CUGU---UGCUCG------------CGCUACuCGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 16350 0.69 0.644178
Target:  5'- cGACGagACGaAGCGCGcgGc-CGCGUCGCu -3'
miRNA:   3'- -CUGU--UGC-UCGCGCuaCucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 16380 0.67 0.78639
Target:  5'- cGGCGGCG-GCcUGAUGAaGCuggccgGCAUCGCg -3'
miRNA:   3'- -CUGUUGCuCGcGCUACU-CG------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 17588 0.67 0.773017
Target:  5'- cGGCGGCGgccaaGGCGCGcagggcaucuuccaGUGGcGCGgGUCGCg -3'
miRNA:   3'- -CUGUUGC-----UCGCGC--------------UACU-CGUgUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 17617 0.66 0.833988
Target:  5'- uGACGAUcaaaacgucgccaGGGCGCcgGAUGuGGCGCAaCGCg -3'
miRNA:   3'- -CUGUUG-------------CUCGCG--CUAC-UCGUGUaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.