miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 18936 0.66 0.825615
Target:  5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3'
miRNA:   3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5'
24302 5' -52.3 NC_005263.2 + 19102 0.75 0.344332
Target:  5'- cGCAACGcacugccggucGGcCGCGccGAGCGCAUCGCc -3'
miRNA:   3'- cUGUUGC-----------UC-GCGCuaCUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 19871 0.81 0.149643
Target:  5'- cACGGCGAGCGCGgcGAGCGCGgccgaUGCa -3'
miRNA:   3'- cUGUUGCUCGCGCuaCUCGUGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 20130 0.66 0.806391
Target:  5'- uACGGCaAGCGCGAcgGuacGGC-CGUCGCg -3'
miRNA:   3'- cUGUUGcUCGCGCUa-C---UCGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20180 0.81 0.137362
Target:  5'- cGACGACGAGCGCGccGGGCGacgCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuaCUCGUguaGCG- -5'
24302 5' -52.3 NC_005263.2 + 20352 0.69 0.655522
Target:  5'- cGCAccucGgGGGCGCGcAUG-GCugAUCGCg -3'
miRNA:   3'- cUGU----UgCUCGCGC-UACuCGugUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20675 0.66 0.833988
Target:  5'- cGCAGuguuugcCGAGCGCGAcGcgacAGCAC-UCGCu -3'
miRNA:   3'- cUGUU-------GCUCGCGCUaC----UCGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20949 0.66 0.825615
Target:  5'- uGAUGACGGccGCGCGcUGucGgACAUCGCc -3'
miRNA:   3'- -CUGUUGCU--CGCGCuACu-CgUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21165 0.68 0.744437
Target:  5'- cGGCAGCGAcgucaucaacguGCGUGgcGAGCuguuccgcauccGCGUUGCa -3'
miRNA:   3'- -CUGUUGCU------------CGCGCuaCUCG------------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21207 0.79 0.192665
Target:  5'- gGGCGAgUGGGUGCGuuucGAGCGCGUCGCa -3'
miRNA:   3'- -CUGUU-GCUCGCGCua--CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21245 0.66 0.806391
Target:  5'- -uCGACG-GCGCGGUGcGCGCcacguAUUGCc -3'
miRNA:   3'- cuGUUGCuCGCGCUACuCGUG-----UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21281 0.67 0.765706
Target:  5'- -uCGAUGAGgcaguCGCaugGAUGAGUugAUCGCg -3'
miRNA:   3'- cuGUUGCUC-----GCG---CUACUCGugUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21371 0.67 0.78639
Target:  5'- cGCAACucGaCGUGAUGGuGCGCuUCGCg -3'
miRNA:   3'- cUGUUGcuC-GCGCUACU-CGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21423 0.66 0.825615
Target:  5'- cGCAuuACGuGCGCaucaAUGGGCGgcCGUCGCg -3'
miRNA:   3'- cUGU--UGCuCGCGc---UACUCGU--GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21634 0.71 0.531799
Target:  5'- uGCGGCGAcGCGCGgcGuauGGCAC-UCGCg -3'
miRNA:   3'- cUGUUGCU-CGCGCuaC---UCGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 22154 0.66 0.806391
Target:  5'- -uCGACG-GCGCGAcGcuCGCAUUGCg -3'
miRNA:   3'- cuGUUGCuCGCGCUaCucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 22537 0.69 0.666842
Target:  5'- --uGACGGGCgGCGcgGAcGCcgACGUCGCg -3'
miRNA:   3'- cugUUGCUCG-CGCuaCU-CG--UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 23447 0.67 0.780252
Target:  5'- -uCGGCGAuCGgGGUGAGUgcuaugucgguuacgACAUCGCg -3'
miRNA:   3'- cuGUUGCUcGCgCUACUCG---------------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 23887 0.77 0.246151
Target:  5'- cGACAAgcgUGAGCGCGcucGUGAGCGCGccCGCg -3'
miRNA:   3'- -CUGUU---GCUCGCGC---UACUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 23895 0.72 0.499292
Target:  5'- -uCAACG-GCGCGcUGAaccaggucgcGCGCAUCGCu -3'
miRNA:   3'- cuGUUGCuCGCGCuACU----------CGUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.