Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 24197 | 0.67 | 0.776127 |
Target: 5'- cGACGgucacgcucGCGGGCGCGcucacGAGCGCGcucaCGCu -3' miRNA: 3'- -CUGU---------UGCUCGCGCua---CUCGUGUa---GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24684 | 0.76 | 0.31138 |
Target: 5'- aACAuCGAGCGC-AUGAGCGCGUUGa -3' miRNA: 3'- cUGUuGCUCGCGcUACUCGUGUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24949 | 0.72 | 0.478118 |
Target: 5'- gGACGGCGGuGCGCGGUucGCAgAUCGg -3' miRNA: 3'- -CUGUUGCU-CGCGCUAcuCGUgUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 25188 | 0.67 | 0.776127 |
Target: 5'- --gGACGGGCGCGcagcuUGGGCACcucCGUc -3' miRNA: 3'- cugUUGCUCGCGCu----ACUCGUGua-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 25556 | 0.67 | 0.776127 |
Target: 5'- uGAUcGCGAGCGCGAcGucGGCGuCcgCGCc -3' miRNA: 3'- -CUGuUGCUCGCGCUaC--UCGU-GuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 25698 | 0.66 | 0.816106 |
Target: 5'- cACGGCGAGCacgGCGgcGcGUACGuUCGCg -3' miRNA: 3'- cUGUUGCUCG---CGCuaCuCGUGU-AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 26078 | 0.69 | 0.689367 |
Target: 5'- uGGCGcACGuGCGCauaGAGCGCGUCGa -3' miRNA: 3'- -CUGU-UGCuCGCGcuaCUCGUGUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 26200 | 0.69 | 0.644178 |
Target: 5'- cGCGGCGGccGCGCGAUGcGGCgGCcguUCGCg -3' miRNA: 3'- cUGUUGCU--CGCGCUAC-UCG-UGu--AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 26454 | 0.67 | 0.769893 |
Target: 5'- aGCAGCGcuugguGCGCGAgugccauacgccGCGCGUCGCc -3' miRNA: 3'- cUGUUGCu-----CGCGCUacu---------CGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 26794 | 0.71 | 0.531799 |
Target: 5'- cGACGGCGuuCGUGAacccGCACGUCGCg -3' miRNA: 3'- -CUGUUGCucGCGCUacu-CGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 28802 | 0.66 | 0.806391 |
Target: 5'- cGCAucCGGGCGCGucacggugaccGUGAcGCGCA-CGCg -3' miRNA: 3'- cUGUu-GCUCGCGC-----------UACU-CGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29065 | 0.66 | 0.834907 |
Target: 5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3' miRNA: 3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29240 | 0.67 | 0.796482 |
Target: 5'- cGCAGCG-GCGCGccGAgGCACG-CGUu -3' miRNA: 3'- cUGUUGCuCGCGCuaCU-CGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29283 | 0.69 | 0.665711 |
Target: 5'- cGGCAAUGAGCugcacgGCGGccgGGucggcauGCGCAUCGCg -3' miRNA: 3'- -CUGUUGCUCG------CGCUa--CU-------CGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29326 | 0.73 | 0.417457 |
Target: 5'- cGCGGCGAGCaCGAUaaccagcgcGAGCACcgCGCc -3' miRNA: 3'- cUGUUGCUCGcGCUA---------CUCGUGuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29818 | 0.78 | 0.220996 |
Target: 5'- uGCGAUGcAGCGCGcacgacGAGCGCAUCGCc -3' miRNA: 3'- cUGUUGC-UCGCGCua----CUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29972 | 0.67 | 0.776127 |
Target: 5'- aGCGGCGggcAGCGCGAUcAGCGCGUa-- -3' miRNA: 3'- cUGUUGC---UCGCGCUAcUCGUGUAgcg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 30434 | 0.77 | 0.258911 |
Target: 5'- uGCGGuCGAGCGCGAgcagcgUGAGCGCGgcggccuUCGCg -3' miRNA: 3'- cUGUU-GCUCGCGCU------ACUCGUGU-------AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 30926 | 0.7 | 0.610122 |
Target: 5'- cGACGGCGuacGCGCGAgcuGCGCAUUcgGCu -3' miRNA: 3'- -CUGUUGCu--CGCGCUacuCGUGUAG--CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 31117 | 0.69 | 0.644178 |
Target: 5'- cGACAcCcGGCGgGAUGAGCGaaaugaugaaGUCGCg -3' miRNA: 3'- -CUGUuGcUCGCgCUACUCGUg---------UAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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