miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 39098 0.69 0.632823
Target:  5'- gGACGGCGAguacGCGCGAcucGuGCGCcgUGCg -3'
miRNA:   3'- -CUGUUGCU----CGCGCUa--CuCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 39694 0.69 0.689367
Target:  5'- cGAUggGGCGAGCGCGAgcUGgaaauggccGGCGCGggcCGCg -3'
miRNA:   3'- -CUG--UUGCUCGCGCU--AC---------UCGUGUa--GCG- -5'
24302 5' -52.3 NC_005263.2 + 40447 0.68 0.744437
Target:  5'- uACAGCGGGCGUGu---GCGCGaUGCg -3'
miRNA:   3'- cUGUUGCUCGCGCuacuCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 40765 0.73 0.450257
Target:  5'- cGGCGGCG-GCaagucgcuccugaacGCGAUgcugaucGAGCGCAUCGCg -3'
miRNA:   3'- -CUGUUGCuCG---------------CGCUA-------CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 41512 0.66 0.816106
Target:  5'- cACGGCGAGCuCGAgaaaucgGAGCGCGUgucagGCg -3'
miRNA:   3'- cUGUUGCUCGcGCUa------CUCGUGUAg----CG- -5'
24302 5' -52.3 NC_005263.2 + 41564 0.66 0.834907
Target:  5'- uGGCGGCGAugcgagcuuucGCGCGuAUGcGCGCcgcuuUCGCu -3'
miRNA:   3'- -CUGUUGCU-----------CGCGC-UACuCGUGu----AGCG- -5'
24302 5' -52.3 NC_005263.2 + 42122 0.68 0.733614
Target:  5'- gGAUAGCGucgugcuGCGCGAcGAgGCGUGUCGCg -3'
miRNA:   3'- -CUGUUGCu------CGCGCUaCU-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 42825 0.66 0.806391
Target:  5'- --aAGCGAGaCGCcuGAUGAGCACGccccCGUa -3'
miRNA:   3'- cugUUGCUC-GCG--CUACUCGUGUa---GCG- -5'
24302 5' -52.3 NC_005263.2 + 42913 0.72 0.499292
Target:  5'- gGAC-GCGAGUGCGc-GAGCAagaAUCGCu -3'
miRNA:   3'- -CUGuUGCUCGCGCuaCUCGUg--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 43178 0.69 0.686001
Target:  5'- aGACGcaguACG-GCGCGAUGuuuuggauggcgacGGCGCGcuaUCGCa -3'
miRNA:   3'- -CUGU----UGCuCGCGCUAC--------------UCGUGU---AGCG- -5'
24302 5' -52.3 NC_005263.2 + 43472 0.67 0.796482
Target:  5'- -uCAGCGGGCGCGuuuggGAGUACGaacuacauaUCGa -3'
miRNA:   3'- cuGUUGCUCGCGCua---CUCGUGU---------AGCg -5'
24302 5' -52.3 NC_005263.2 + 43588 0.69 0.671361
Target:  5'- uGACGAUGGGCuacgacgcggaagucGCGAUGGGcCAgAUCGg -3'
miRNA:   3'- -CUGUUGCUCG---------------CGCUACUC-GUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 45167 0.69 0.644178
Target:  5'- -uCGGCG-GCgGCGAUG-GCGCAUuCGCg -3'
miRNA:   3'- cuGUUGCuCG-CGCUACuCGUGUA-GCG- -5'
24302 5' -52.3 NC_005263.2 + 45473 0.69 0.644178
Target:  5'- -cCGGCaAGCGCGAUGAaccGCGCggucggccuGUCGCg -3'
miRNA:   3'- cuGUUGcUCGCGCUACU---CGUG---------UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 46831 0.7 0.621467
Target:  5'- cGCAACGcgcgccaggcGGCGCGccaagGAGCACGUCa- -3'
miRNA:   3'- cUGUUGC----------UCGCGCua---CUCGUGUAGcg -5'
24302 5' -52.3 NC_005263.2 + 46956 0.71 0.541703
Target:  5'- cGCGACGGGCGCacuacuuucGAGCggguugaGCAUCGCa -3'
miRNA:   3'- cUGUUGCUCGCGcua------CUCG-------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47401 0.66 0.825615
Target:  5'- cACGGCGcuCGCGGgcgGcGGCACgAUCGCg -3'
miRNA:   3'- cUGUUGCucGCGCUa--C-UCGUG-UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47446 0.67 0.78639
Target:  5'- uACGAUGAgGCGUucGAucUGgccGGCACGUCGCg -3'
miRNA:   3'- cUGUUGCU-CGCG--CU--AC---UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47500 0.73 0.437164
Target:  5'- -cCAGcCGAuuGCGCGA--AGCACAUCGCg -3'
miRNA:   3'- cuGUU-GCU--CGCGCUacUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47931 0.71 0.542808
Target:  5'- gGGCAGCGGGCuCGccccGGGCGCGgaUCGCg -3'
miRNA:   3'- -CUGUUGCUCGcGCua--CUCGUGU--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.