miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 39098 0.69 0.632823
Target:  5'- gGACGGCGAguacGCGCGAcucGuGCGCcgUGCg -3'
miRNA:   3'- -CUGUUGCU----CGCGCUa--CuCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 38901 0.67 0.776127
Target:  5'- cGGCAccgucACGAGCaagccggcgccGCGccGAGCucgACGUCGCg -3'
miRNA:   3'- -CUGU-----UGCUCG-----------CGCuaCUCG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38786 0.67 0.755138
Target:  5'- uGACGAUGGaaGCGGccacGAGCGgCAUCGCu -3'
miRNA:   3'- -CUGUUGCUcgCGCUa---CUCGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38625 0.76 0.303526
Target:  5'- gGAUAGCGccGGCGCGaAUGaAGcCGCGUCGCg -3'
miRNA:   3'- -CUGUUGC--UCGCGC-UAC-UC-GUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38538 0.75 0.325085
Target:  5'- gGGCAGCGAGCGCGccgccuggcaagccGcGAGCGCcgCGUc -3'
miRNA:   3'- -CUGUUGCUCGCGC--------------UaCUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 38387 0.67 0.776127
Target:  5'- uGGCgAACGAGCGCa---AGCGCGcCGCa -3'
miRNA:   3'- -CUG-UUGCUCGCGcuacUCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 37920 0.68 0.711657
Target:  5'- aACAGCGGGCGCa---GGCGCGcCGCc -3'
miRNA:   3'- cUGUUGCUCGCGcuacUCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 37841 0.81 0.149643
Target:  5'- --aAGCG-GCGCGAUGcgaAGCGCAUCGCg -3'
miRNA:   3'- cugUUGCuCGCGCUAC---UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 37810 0.75 0.319388
Target:  5'- uGACGACGGGCGCGcauccGGCGCucauGUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuac--UCGUG----UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 37084 0.7 0.618062
Target:  5'- gGACAGC-AGCGCGAUc-GCACAcaugacggaggguuUCGCa -3'
miRNA:   3'- -CUGUUGcUCGCGCUAcuCGUGU--------------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 36682 0.68 0.744437
Target:  5'- uGGCAGCauucGAGCGCGGgcaagGAGC-CG-CGCc -3'
miRNA:   3'- -CUGUUG----CUCGCGCUa----CUCGuGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 36075 0.66 0.806391
Target:  5'- aGCGAUGuaccGGCGCaagcuUGAGCGCgccGUCGCg -3'
miRNA:   3'- cUGUUGC----UCGCGcu---ACUCGUG---UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 35466 0.69 0.678128
Target:  5'- uGACAGCGGGCGCcGAaaccGA-CGuCGUCGCa -3'
miRNA:   3'- -CUGUUGCUCGCG-CUa---CUcGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 33677 0.69 0.632823
Target:  5'- ---uGCGGGCGCGAaucuUG-GCGCAgCGCg -3'
miRNA:   3'- cuguUGCUCGCGCU----ACuCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 33466 0.74 0.388936
Target:  5'- cGGCgGACGAGCGCGuAUG-GCugAUCGa -3'
miRNA:   3'- -CUG-UUGCUCGCGC-UACuCGugUAGCg -5'
24302 5' -52.3 NC_005263.2 + 33462 0.67 0.755138
Target:  5'- uGGCAACucggucAGCGUGAUcacGAGCccuuCGUCGCg -3'
miRNA:   3'- -CUGUUGc-----UCGCGCUA---CUCGu---GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 33389 0.68 0.741202
Target:  5'- cGGCAAUGccacuauccggaucGGCGuCGAucgccuUGAGCGCcgCGCg -3'
miRNA:   3'- -CUGUUGC--------------UCGC-GCU------ACUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 33153 0.66 0.806391
Target:  5'- aGCcAUGAGCGCGGc--GCcuuGCAUCGCg -3'
miRNA:   3'- cUGuUGCUCGCGCUacuCG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 32584 1.11 0.001233
Target:  5'- gGACAACGAGCGCGAUGAGCACAUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCUACUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 32099 0.73 0.407808
Target:  5'- cGGCGGCGucGGUGCGAUcGAGCGCuUCGa -3'
miRNA:   3'- -CUGUUGC--UCGCGCUA-CUCGUGuAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.